Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   PIC95_RS03825 Genome accession   NZ_CP116085
Coordinates   782259..783428 (-) Length   389 a.a.
NCBI ID   WP_001161833.1    Uniprot ID   -
Organism   Escherichia coli strain DETEC-S566     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 777259..788428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC95_RS03810 (PIC95_03810) - 777943..778977 (-) 1035 Protein_747 IS481 family transposase -
  PIC95_RS03815 (PIC95_03815) kfiC 779138..780700 (+) 1563 WP_001305085.1 K5 polysaccharide biosynthesis glycosyltransferase KfiC -
  PIC95_RS03820 (PIC95_03820) kfiD 780742..781920 (+) 1179 WP_001305084.1 K5 polysaccharide biosynthesis UDP-glucose dehydrogenase KfiD -
  PIC95_RS03825 (PIC95_03825) kpsS 782259..783428 (-) 1170 WP_001161833.1 capsule biosynthesis protein Regulator
  PIC95_RS03830 (PIC95_03830) - 783463..785490 (-) 2028 WP_000579512.1 capsular polysaccharide biosynthesis protein -
  PIC95_RS03835 (PIC95_03835) kdsB 785487..786227 (-) 741 Protein_752 3-deoxy-manno-octulosonate cytidylyltransferase -
  PIC95_RS03840 (PIC95_03840) - 786237..787913 (-) 1677 WP_001323195.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 46363.57 Da        Isoelectric Point: 10.1120

>NTDB_id=707495 PIC95_RS03825 WP_001161833.1 782259..783428(-) (kpsS) [Escherichia coli strain DETEC-S566]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWHEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDIKLFKKFRGYLLVKTQVNAVYY

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=707495 PIC95_RS03825 WP_001161833.1 782259..783428(-) (kpsS) [Escherichia coli strain DETEC-S566]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCCTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGCATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGATTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCAGATATAAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

100

0.398