Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   H7679_RS03510 Genome accession   NZ_AP023392
Coordinates   687332..689545 (+) Length   737 a.a.
NCBI ID   WP_024395268.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT300     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 682332..694545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS03505 (DAT300_06440) cls 685629..687176 (+) 1548 WP_024395267.1 cardiolipin synthase -
  H7679_RS03510 (DAT300_06450) recJ 687332..689545 (+) 2214 WP_024395268.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  H7679_RS03515 (DAT300_06460) - 689524..690654 (+) 1131 WP_024395269.1 DUF3114 domain-containing protein -
  H7679_RS03520 (DAT300_06470) - 690708..691220 (+) 513 WP_002937136.1 adenine phosphoribosyltransferase -
  H7679_RS03525 (DAT300_06480) metA 691324..692265 (+) 942 WP_024395270.1 homoserine O-acetyltransferase MetA -
  H7679_RS03530 (DAT300_06490) - 692275..692949 (+) 675 WP_024386906.1 DnaD domain-containing protein -
  H7679_RS03535 (DAT300_06500) - 692951..693634 (+) 684 WP_024393227.1 tRNA (adenine(22)-N(1))-methyltransferase -
  H7679_RS03540 (DAT300_06510) - 693624..694418 (+) 795 WP_024395271.1 Nif3-like dinuclear metal center hexameric protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82650.30 Da        Isoelectric Point: 4.4807

>NTDB_id=70737 H7679_RS03510 WP_024395268.1 687332..689545(+) (recJ) [Streptococcus suis strain DAT300]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKN
VERKDVVQAIYDEAKTMLRQDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELAQTLADYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIRDFQVESARTMGQNNAHLKLRITKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIAKPYYLDGYGSREQFAK
LYKTIYQFDEFDVRYKLKDLAVYLKIKDSLLVKMIQIFQELEFVTITDGVMRVNKDAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=70737 H7679_RS03510 WP_024395268.1 687332..689545(+) (recJ) [Streptococcus suis strain DAT300]
GTGATAAAACCCAATTATGACTGGCAATTATTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGACCTTCACGATCCCTATTTACTACATGATATGGATAAGGCGGTAGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGACGCAGACGGCATGACCTCGGCATCTATTCTGAAAGAAACTTTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCTAACCGTTTCACAGATGGCTATGGGCCGAATCAGTCAGTTTACAAGTATT
TTATCGAGCAGCAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCAGAGGGAAATTATCCCTTCAAACATTTGGCGGGCTGCGGTGTGGCTTTTAAATTGGCCTGTGCTCTTCTTG
AAACTGTTCATGCAGACTTACTGGATTTGGTCGCAATTGGCACCATCGCTGATATGGTTAGCTTGACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTCTCGCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTCGATGATC
CTAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATCAAATTGCCCTCATGATTGATAGTAAAAAT
GTAGAACGCAAAGACGTCGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTCCGTCAGGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAATCCAGGTGTTTTAGGGATTGTAGCTGGACGCCTACTAGAAGAATTACAGCAACCTGTTATCG
TCTTGTCGATTGAAGATGGTAAGGCAAAGGGTTCGGCTCGTTCGGTTGAAGCGGTTGACATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTCTTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCAAACCTTGGCTGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTATGGCATGGATAATAAAAAGCCT
GTATTCTACATCAGAGACTTTCAGGTGGAATCAGCAAGGACCATGGGGCAGAATAATGCCCATTTGAAACTACGCATTAC
TAAAGGTGCGGCAGGATTTGATGTCGTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTCACCTTGTCTGTCAATCAATGGAATGGCAATACTAGTCTTCAGCTCATGTTGGTTGATGCTCGGGTCAAT
GGTGTTCAACTTTATAATATTCGTGGAAAACAACATCCTATTCCTGCAGGAGTCCCAATTTTGGACATTGAAAATCCAGT
AGCAGATAACAAAGCAATTGTCTTGGCTAACTTGCCTGAGGACCTCAGTAGTTTGCGTAGCTATTTTCAGGAAAGAGAAT
TTGAAGCCATTTATTTTAAAAACGAAATTGCCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTATAAGACTATTTACCAATTTGATGAGTTTGATGTTCGCTACAAACTGAAAGATTTGGCTGTTTACTTAAAAATTAA
GGACAGTCTATTGGTTAAAATGATTCAGATTTTCCAAGAATTAGAATTTGTCACGATTACGGATGGGGTCATGCGGGTCA
ACAAAGATGCACAGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.826

99.864

0.727
  recJ Bacillus subtilis subsp. subtilis str. 168

38.235

100

0.388