Detailed information NTG0707287

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: PID00_RS18220
• Genome accession: NZ_CP116067
• Coordinates: 3643568..3644593 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644911.1
• Uniprot ID: -
• Organism: Escherichia coli strain DETEC-S792
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3638568..3649593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PID00_RS18190 (PID00_18190)	zapB	3638652..3638897 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
PID00_RS18195 (PID00_18195)	rraA	3638982..3639467 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
PID00_RS18200 (PID00_18200)	menA	3639560..3640486 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
PID00_RS18205 (PID00_18205)	hslU	3640553..3641884 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
PID00_RS18210 (PID00_18210)	hslV	3641894..3642424 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
PID00_RS18215 (PID00_18215)	ftsN	3642517..3643476 (-)	960	WP_071601985.1	cell division protein FtsN	-
PID00_RS18220 (PID00_18220)	cytR	3643568..3644593 (-)	1026	WP_000644911.1	DNA-binding transcriptional regulator CytR	Regulator
PID00_RS18225 (PID00_18225)	priA	3644749..3646947 (-)	2199	WP_096122050.1	primosomal protein N'	Machinery gene
PID00_RS18230 (PID00_18230)	rpmE	3647150..3647362 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
PID00_RS18235 (PID00_18235)	yiiX	3647423..3648031 (-)	609	WP_000702299.1	YiiX family permuted papain-like enzyme	-
PID00_RS18240 (PID00_18240)	metJ	3648091..3648408 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37805.71 Da
• Isoelectric Point: 6.1617

>NTDB_id=707287 PID00_RS18220 WP_000644911.1 3643568..3644593(-) (cytR) [Escherichia coli strain DETEC-S792]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHNRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=707287 PID00_RS18220 WP_000644911.1 3643568..3644593(-) (cytR) [Escherichia coli strain DETEC-S792]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACTATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAATCGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTCCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGTTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625