Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   PID00_RS17575 Genome accession   NZ_CP116067
Coordinates   3510418..3512247 (+) Length   609 a.a.
NCBI ID   WP_024196241.1    Uniprot ID   -
Organism   Escherichia coli strain DETEC-S792     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3505418..3517247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PID00_RS17550 (PID00_17550) - 3506191..3506688 (-) 498 WP_000837559.1 DUF943 family protein -
  PID00_RS17555 (PID00_17555) - 3506685..3507533 (-) 849 WP_001059675.1 YPO3983 family protein -
  PID00_RS17560 (PID00_17560) rarD 3507843..3508733 (-) 891 WP_000379996.1 EamA family transporter RarD -
  PID00_RS17565 (PID00_17565) yigI 3508785..3509252 (-) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  PID00_RS17570 (PID00_17570) pldA 3509417..3510286 (+) 870 WP_096121958.1 phospholipase A -
  PID00_RS17575 (PID00_17575) recQ 3510418..3512247 (+) 1830 WP_024196241.1 ATP-dependent DNA helicase RecQ Machinery gene
  PID00_RS17580 (PID00_17580) rhtC 3512311..3512931 (+) 621 WP_000928844.1 threonine export protein RhtC -
  PID00_RS17585 (PID00_17585) rhtB 3512993..3513613 (-) 621 WP_096121957.1 homoserine/homoserine lactone efflux protein -
  PID00_RS17590 (PID00_17590) pldB 3513724..3514746 (+) 1023 WP_000487644.1 lysophospholipase L2 -
  PID00_RS17595 (PID00_17595) yigL 3514754..3515554 (+) 801 WP_000285353.1 sugar/pyridoxal phosphate phosphatase YigL -
  PID00_RS17600 (PID00_17600) bioP 3515630..3516529 (+) 900 WP_001196237.1 biotin transporter -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68350.46 Da        Isoelectric Point: 7.0906

>NTDB_id=707283 PID00_RS17575 WP_024196241.1 3510418..3512247(+) (recQ) [Escherichia coli strain DETEC-S792]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPISASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=707283 PID00_RS17575 WP_024196241.1 3510418..3512247(+) (recQ) [Escherichia coli strain DETEC-S792]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAGATTATCGACACCGTACTTTCCGGTCGCGATTGCCTGGTCGTCATGCCCACTGGTGGCGGAAAAT
CCCTTTGCTATCAAATTCCTGCCTTACTGCTAAACGGTCTTACCGTGGTTGTTTCACCACTGATTTCGTTGATGAAAGAT
CAGGTGGATCAGCTACAGGCCAACGGTGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAGCAGCAGCTTGAAGT
GATGACAGGCTGTCGCACCGGGCAAATTCGTCTGCTTTATATCGCCCCGGAACGCCTGATGCTGGATAACTTTCTTGAGC
ATCTGGCGCACTGGAATCCGGTGTTATTAGCCGTTGATGAAGCGCACTGTATCTCCCAATGGGGCCACGATTTCCGCCCG
GAATATGCCGCGCTCGGTCAGTTGCGCCAGCGGTTCCCGACGCTGCCGTTTATGGCGCTAACCGCCACCGCCGACGACAC
CACGCGGCAGGATATCGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATTAGCAGTTTTGACCGTCCGAATATTC
GCTACATGCTGATGGAGAAATTCAAACCGCTCGATCAGTTGATGCGTTATGTACAGGAACAACGCGGTAAGTCGGGGATT
ATTTACTGTAATAGTCGTGCGAAAGTAGAAGACACCGCCGCGCGTCTGCAAAGCAAGGGTATCAGCGCAGCGGCTTATCA
CGCCGGGCTTGAAAACGATGTCCGTGCGGACGTGCAGGAAAAATTCCAGCGTGATGACCTGCAAATTGTGGTGGCGACGG
TAGCGTTCGGCATGGGCATCAACAAGCCTAACGTCCGCTTCGTGGTTCACTTTGATATTCCACGCAATATCGAATCCTAT
TATCAGGAAACCGGTCGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTG
GCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCATAAACTCAATGCGATGGGCGCTT
TTGCCGAAGCGCAAACTTGCCGTCGTCTGGTGCTGCTGAACTACTTTGGCGAAGGGCGGCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCGAAACAATACGATGGTTCAACCGATGCGCAGATTGCGCTTTCCACCATTGGTCGTGTGAA
TCAGCGTTTTGGGATGGGCTATGTAGTGGAAGTGATTCGCGGCGCCAATAACCAGCGAATCCGCGACTATGGTCATGACA
AACTGAAAGTCTACGGCATGGGCCGCGATAAAAGTCATGAGCACTGGGTGAGCGTAATCCGCCAGTTGATTCATCTCGGT
CTGGTGACGCAAAACATCGCCCAGCATTCGGCATTACAACTGACAGAAGCCGCACGCCCGGTGTTGCGCGGCGAATCCTC
TTTACAACTTGCCGTGCCGCGTATTGTGGCGCTCAAACCGAAAGCAATGCAGAAATCTTTCGGTGGCAATTACGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGTAATGTCCCGCCGTATGTGGTGTTTAACGAT
GCGACCTTGATTGAGATGGCGGAACAGATGCCGATCTCCGCCAGCGAAATGCTCAGCGTTAACGGCGTTGGGATGCGCAA
GCTGGAACGCTTTGGCAAACCGTTTATGGCGCTAATTCGTGCGCATGTCGATGGCGATGACGAAGAGTAG

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

DEAD/DEAH box helicase (DEAD)

(28-187)

HRDC domain (HRDC)

(533-599)

RQC domain (RQC)

(406-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.372

97.209

0.392