Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PID00_RS10715 Genome accession   NZ_CP116067
Coordinates   2089855..2090592 (+) Length   245 a.a.
NCBI ID   WP_000197684.1    Uniprot ID   -
Organism   Escherichia coli strain DETEC-S792     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2084855..2095592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PID00_RS10700 (PID00_10700) clpC 2085309..2087882 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  PID00_RS10705 (PID00_10705) yfiH 2088012..2088743 (-) 732 WP_000040126.1 purine nucleoside phosphorylase YfiH -
  PID00_RS10710 (PID00_10710) rluD 2088740..2089720 (-) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PID00_RS10715 (PID00_10715) comL 2089855..2090592 (+) 738 WP_000197684.1 outer membrane protein assembly factor BamD Machinery gene
  PID00_RS10720 (PID00_10720) - 2090696..2092043 (+) 1348 Protein_2114 IS4-like element IS4 family transposase -
  PID00_RS10725 (PID00_10725) raiA 2092304..2092645 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PID00_RS10730 (PID00_10730) pheL 2092749..2092796 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  PID00_RS10735 (PID00_10735) pheA 2092895..2094055 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  PID00_RS10740 (PID00_10740) tyrA 2094098..2095219 (-) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27811.36 Da        Isoelectric Point: 6.4874

>NTDB_id=707249 PID00_RS10715 WP_000197684.1 2089855..2090592(+) (comL) [Escherichia coli strain DETEC-S792]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=707249 PID00_RS10715 WP_000197684.1 2089855..2090592(+) (comL) [Escherichia coli strain DETEC-S792]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384