Detailed information NTG0707173

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PIH14_RS09115
• Genome accession: NZ_CP116046
• Coordinates: 1861808..1862800 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC812A1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1856808..1867800

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PIH14_RS09095 (PIH14_09095)	otnK	1857583..1858845 (+)	1263	WP_000590405.1	3-oxo-tetronate kinase	-
PIH14_RS09100 (PIH14_09100)	ygbL	1858842..1859480 (+)	639	WP_001278994.1	aldolase	-
PIH14_RS09105 (PIH14_09105)	ygbM	1859485..1860261 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
PIH14_RS09110 (PIH14_09110)	ygbN	1860350..1861714 (+)	1365	WP_000104429.1	GntP family transporter	-
PIH14_RS09115 (PIH14_09115)	rpoS	1861808..1862800 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PIH14_RS09120 (PIH14_09120)	nlpD	1862863..1863957 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
PIH14_RS09125 (PIH14_09125)	pcm	1864142..1864768 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PIH14_RS09130 (PIH14_09130)	surE	1864762..1865523 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PIH14_RS09135 (PIH14_09135)	truD	1865504..1866553 (-)	1050	WP_024238652.1	tRNA pseudouridine(13) synthase TruD	-
PIH14_RS09140 (PIH14_09140)	ispF	1866550..1867029 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PIH14_RS09145 (PIH14_09145)	ispD	1867029..1867739 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=707173 PIH14_RS09115 WP_000081550.1 1861808..1862800(-) (rpoS) [Escherichia coli strain EC812A1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=707173 PIH14_RS09115 WP_000081550.1 1861808..1862800(-) (rpoS) [Escherichia coli strain EC812A1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715