Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   PF977_RS22385 Genome accession   NZ_CP116012
Coordinates   4247289..4247519 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SRCM124333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4242289..4252519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS22375 (PF977_22375) spoVT 4243014..4243550 (-) 537 WP_003218365.1 stage V sporulation protein T -
  PF977_RS22380 (PF977_22380) mfd 4243686..4247219 (-) 3534 WP_003226723.1 transcription-repair coupling factor -
  PF977_RS22385 (PF977_22385) subA/fin 4247289..4247519 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  PF977_RS22390 (PF977_22390) pth 4247579..4248145 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  PF977_RS22395 (PF977_22395) rplYB 4248252..4248866 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  PF977_RS22400 (PF977_22400) prsS 4248951..4249904 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  PF977_RS22405 (PF977_22405) glmU 4249927..4251297 (-) 1371 WP_015715104.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  PF977_RS22410 (PF977_22410) spoVG 4251490..4251783 (-) 294 WP_003218346.1 septation regulator SpoVG -
  PF977_RS22415 (PF977_22415) ridA 4251978..4252355 (-) 378 WP_015715103.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=706974 PF977_RS22385 WP_003243417.1 4247289..4247519(-) (subA/fin) [Bacillus subtilis strain SRCM124333]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=706974 PF977_RS22385 WP_003243417.1 4247289..4247519(-) (subA/fin) [Bacillus subtilis strain SRCM124333]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1