Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NMD90_RS14390 Genome accession   NZ_CP100784
Coordinates   3106502..3107971 (+) Length   489 a.a.
NCBI ID   WP_370555935.1    Uniprot ID   -
Organism   Edwardsiella tarda strain GT117     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3101502..3112971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD90_RS14360 (NMD90_14330) - 3101932..3102921 (+) 990 WP_078000403.1 calcium/sodium antiporter -
  NMD90_RS14365 (NMD90_14335) kdsD 3102974..3103960 (+) 987 WP_078000404.1 arabinose-5-phosphate isomerase KdsD -
  NMD90_RS14370 (NMD90_14340) kdsC 3103976..3104542 (+) 567 WP_370555934.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  NMD90_RS14375 (NMD90_14345) lptC 3104539..3105111 (+) 573 WP_035604656.1 LPS export ABC transporter periplasmic protein LptC -
  NMD90_RS14380 (NMD90_14350) lptA 3105086..3105643 (+) 558 WP_005281704.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  NMD90_RS14385 (NMD90_14355) lptB 3105650..3106375 (+) 726 WP_005281703.1 LPS export ABC transporter ATP-binding protein -
  NMD90_RS14390 (NMD90_14360) rpoN/rpoN1 3106502..3107971 (+) 1470 WP_370555935.1 RNA polymerase factor sigma-54 Machinery gene
  NMD90_RS14395 (NMD90_14365) hpf 3107993..3108280 (+) 288 WP_024524583.1 ribosome hibernation promoting factor -
  NMD90_RS14400 (NMD90_14370) ptsN 3108415..3108861 (+) 447 WP_005297331.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NMD90_RS14405 (NMD90_14375) rapZ 3108969..3109820 (+) 852 WP_005281696.1 RNase adapter RapZ -
  NMD90_RS14410 (NMD90_14380) npr 3109828..3110100 (+) 273 WP_005281695.1 PTS phosphocarrier protein NPr -
  NMD90_RS14415 (NMD90_14385) rnk 3110277..3110687 (+) 411 WP_370555936.1 nucleoside diphosphate kinase regulator -
  NMD90_RS14420 (NMD90_14390) - 3110723..3111226 (-) 504 WP_035604652.1 cytochrome b/b6 domain-containing protein -
  NMD90_RS14425 (NMD90_14395) cybC 3111232..3111618 (-) 387 WP_035604649.1 cytochrome b562 -
  NMD90_RS14430 (NMD90_14400) tnpA 3111844..3112281 (-) 438 WP_035598237.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 54987.85 Da        Isoelectric Point: 4.4249

>NTDB_id=706924 NMD90_RS14390 WP_370555935.1 3106502..3107971(+) (rpoN/rpoN1) [Edwardsiella tarda strain GT117]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQQALESNPLLEQLDPNEEAGDDGVVRENTQEDVVTRDDADPLD
SREALEQREMPDELPLDASWDEIYTAGTPSGTGTDYHDDELPVFQGETTQTLQDYLMWQVELTPFSDTDLAIATAIVDAV
DDTGYLSASLAEILESLGDDRVLPEEIEAVLKRIQRFDPVGVAARDLRDCLLVQLSQFADDTPYLNEARSIVDRHLDLLG
NHDFRNLMRSTKLKEEVLKAAMQLIQSLDPRPGLSINTGESDYVIPDVLVHKHQERWVVELNQDSVPRLRINQHYAALGA
QARNDSDSQFIRSNLQEAKWLIKSLESRNDTLLKVSRCIVEQQQAFFEHGPEAMKPMVLADIAQQVEMHESTISRVTTQK
FLHSPRGIFELKYFFSSHVSTEDGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTLLADQGIMVARRTVAKYRESLSIP
PSNQRKQLV

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=706924 NMD90_RS14390 WP_370555935.1 3106502..3107971(+) (rpoN/rpoN1) [Edwardsiella tarda strain GT117]
ATGAAGCAAGGCTTGCAACTCAGACTCAGCCAGCAGTTGGCCATGACGCCCCAACTGCAACAGGCCATTCGCCTGTTGCA
GCTCTCGACGCTGGAGTTACAGCAAGAGATCCAGCAGGCGTTGGAAAGCAATCCTCTGCTGGAACAACTGGATCCCAATG
AGGAAGCCGGCGACGACGGCGTCGTTCGCGAGAATACACAGGAGGATGTCGTCACACGCGATGATGCCGATCCACTGGAT
AGCCGCGAGGCGTTGGAGCAACGTGAGATGCCGGACGAGCTGCCGCTGGATGCCAGCTGGGACGAGATCTATACCGCTGG
CACCCCCTCAGGCACGGGAACGGATTATCATGACGACGAGTTACCCGTGTTTCAGGGAGAGACGACCCAAACGCTGCAGG
ACTATCTGATGTGGCAGGTCGAACTGACCCCCTTCAGTGATACCGATCTGGCCATCGCTACCGCCATCGTCGATGCCGTC
GACGATACCGGCTATCTCAGCGCTTCGTTGGCGGAGATCCTCGAGAGTCTGGGGGACGATCGCGTCCTACCGGAAGAGAT
CGAGGCCGTCCTCAAGCGCATCCAACGTTTTGATCCGGTCGGTGTCGCCGCGCGTGATCTGCGCGACTGCCTACTGGTCC
AGCTCTCGCAATTCGCCGACGACACGCCCTATCTCAACGAGGCTCGTAGCATCGTCGATCGCCACCTCGATCTGTTGGGT
AATCACGATTTCCGAAATCTGATGCGTTCGACTAAGCTAAAAGAAGAGGTGCTCAAGGCGGCGATGCAACTGATCCAGAG
CCTCGACCCGCGGCCAGGACTCTCCATCAATACCGGCGAGTCTGACTACGTCATCCCCGACGTGCTGGTGCATAAACATC
AGGAACGCTGGGTGGTTGAGCTCAATCAGGACAGCGTCCCGCGCCTGCGTATCAACCAACATTACGCCGCGCTGGGCGCT
CAGGCGCGTAACGACAGCGACAGCCAGTTCATTCGCAGCAATCTGCAAGAAGCGAAGTGGCTGATCAAGAGCCTAGAGAG
CCGTAACGATACCCTGCTGAAGGTATCGCGTTGCATCGTAGAGCAGCAGCAAGCGTTCTTCGAGCACGGGCCGGAGGCGA
TGAAGCCGATGGTACTGGCTGATATCGCTCAGCAAGTCGAAATGCACGAATCGACGATCTCACGTGTGACTACGCAGAAG
TTTCTGCACAGCCCGCGTGGAATCTTTGAACTGAAATATTTCTTCTCCAGCCATGTCAGCACCGAGGACGGCGGCGAGGC
CTCCTCCACGGCCATCCGGGCGCTGGTGAAGAAACTGATCGCGGCAGAAAATCCGGCGAAACCGCTGAGTGATAGCAAAC
TTACCACTCTATTGGCAGATCAGGGTATCATGGTCGCCCGGCGTACTGTCGCAAAATACCGAGAGTCTTTGTCCATTCCA
CCGTCCAATCAGCGTAAACAGCTGGTGTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(128-315)

Sigma-54, DNA binding domain (Sigma54_DBD)

(329-487)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.367

100

0.481