Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   PF977_RS13375 Genome accession   NZ_CP116012
Coordinates   2537272..2537703 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM124333     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2532272..2542703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS13365 (PF977_13365) hexA 2533756..2536332 (-) 2577 WP_064911512.1 DNA mismatch repair protein MutS Machinery gene
  PF977_RS13370 (PF977_13370) cotE 2536465..2537010 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  PF977_RS13375 (PF977_13375) ymcA 2537272..2537703 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  PF977_RS13380 (PF977_13380) miaB 2537705..2539234 (-) 1530 WP_064911513.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  PF977_RS13385 (PF977_13385) kbl 2539382..2540560 (-) 1179 WP_064911514.1 glycine C-acetyltransferase -
  PF977_RS13390 (PF977_13390) tdh 2540573..2541616 (-) 1044 WP_049140039.1 L-threonine 3-dehydrogenase -
  PF977_RS13395 (PF977_13395) spoVS 2541881..2542141 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=706906 PF977_RS13375 WP_003231834.1 2537272..2537703(-) (ymcA) [Bacillus subtilis strain SRCM124333]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=706906 PF977_RS13375 WP_003231834.1 2537272..2537703(-) (ymcA) [Bacillus subtilis strain SRCM124333]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1