Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   PF977_RS10705 Genome accession   NZ_CP116012
Coordinates   2011071..2012846 (+) Length   591 a.a.
NCBI ID   WP_064911726.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM124333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2006071..2017846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS10655 (PF977_10655) yozC 2006517..2006720 (+) 204 WP_003231245.1 DUF6501 family protein -
  PF977_RS10660 (PF977_10660) yozO 2007074..2007418 (+) 345 WP_003220141.1 PH domain-containing protein -
  PF977_RS10665 (PF977_10665) - 2007498..2007731 (-) 234 WP_003231251.1 hypothetical protein -
  PF977_RS10670 (PF977_10670) - 2007736..2007999 (-) 264 WP_004399338.1 hypothetical protein -
  PF977_RS10675 (PF977_10675) yocM 2008066..2008542 (+) 477 WP_064911728.1 salt stress-responsive protein YocM -
  PF977_RS10680 (PF977_10680) - 2008529..2008756 (-) 228 WP_014480021.1 hypothetical protein -
  PF977_RS10685 (PF977_10685) - 2008834..2009166 (+) 333 WP_064911727.1 hypothetical protein -
  PF977_RS10690 (PF977_10690) stpP 2009239..2009730 (+) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  PF977_RS10695 (PF977_10695) azoJ 2009881..2010507 (+) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  PF977_RS10705 (PF977_10705) recQ 2011071..2012846 (+) 1776 WP_064911726.1 DNA helicase RecQ Machinery gene
  PF977_RS10710 (PF977_10710) walN 2013094..2013957 (+) 864 WP_003231267.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  PF977_RS10715 (PF977_10715) desR 2014550..2015149 (-) 600 WP_004399356.1 two-component system response regulator DesR -
  PF977_RS10720 (PF977_10720) desK 2015168..2016280 (-) 1113 WP_064911725.1 two-component sensor histidine kinase DesK -
  PF977_RS10725 (PF977_10725) desE 2016400..2017458 (-) 1059 WP_064911724.1 fatty acid desaturase DesE -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67349.89 Da        Isoelectric Point: 6.3539

>NTDB_id=706899 PF977_RS10705 WP_064911726.1 2011071..2012846(+) (recQ) [Bacillus subtilis strain SRCM124333]
MLHRAQSLLAHFFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNHVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEICDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=706899 PF977_RS10705 WP_064911726.1 2011071..2012846(+) (recQ) [Bacillus subtilis strain SRCM124333]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTTTTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAAGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCATTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAACCATGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGGTTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAGCATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTATTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAAGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAATGGCTTTTCAGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCTGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGCGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGTCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

RQC domain (RQC)

(403-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.323

100

0.993