Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   PF977_RS03265 Genome accession   NZ_CP116012
Coordinates   633745..634458 (+) Length   237 a.a.
NCBI ID   WP_003244535.1    Uniprot ID   O06978
Organism   Bacillus subtilis strain SRCM124333     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 628745..639458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS03230 (PF977_03230) rppI 628991..629467 (+) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -
  PF977_RS03235 (PF977_03235) rapZ 629492..630379 (+) 888 WP_003243903.1 RNase adapter RapZ -
  PF977_RS03240 (PF977_03240) mgfK 630381..631334 (+) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  PF977_RS03245 (PF977_03245) whiA 631357..632307 (+) 951 WP_003243775.1 DNA-binding protein WhiA -
  PF977_RS03250 (PF977_03250) crh 632331..632588 (+) 258 WP_003219835.1 HPr family phosphocarrier protein -
  PF977_RS03255 (PF977_03255) yvcN 632589..633353 (+) 765 WP_015714771.1 arylamine N-acetyltransferase family protein -
  PF977_RS03260 (PF977_03260) - 633389..633598 (-) 210 WP_014665489.1 hypothetical protein -
  PF977_RS03265 (PF977_03265) braR 633745..634458 (+) 714 WP_003244535.1 two-component system response regulator PsdR Regulator
  PF977_RS03270 (PF977_03270) psdS 634452..635522 (+) 1071 WP_015714770.1 two-component sensor histidine kinase PsdS -
  PF977_RS03275 (PF977_03275) psdA 635605..636384 (+) 780 WP_015714769.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  PF977_RS03280 (PF977_03280) psdB 636359..638299 (+) 1941 WP_015714768.1 lantibiotic ABC transporter permease PsdB -
  PF977_RS03285 (PF977_03285) ghrB 638336..639313 (-) 978 WP_074794322.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27514.39 Da        Isoelectric Point: 4.6062

>NTDB_id=706850 PF977_RS03265 WP_003244535.1 633745..634458(+) (braR) [Bacillus subtilis strain SRCM124333]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=706850 PF977_RS03265 WP_003244535.1 633745..634458(+) (braR) [Bacillus subtilis strain SRCM124333]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGTAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATACTCGCCCTCTTTGCCGCAGGAATCAAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAAAATGAAGCGGAGTGGAACAGCGTCCGGATTTTGTTTTCCCAAAAA
GAATTTCAGCTTCTCTCTATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAACCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGCTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAGTGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O06978

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43