Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   PF977_RS00715 Genome accession   NZ_CP116012
Coordinates   133227..133916 (+) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain SRCM124333     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 128227..138916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS00695 (PF977_00695) iolG 129381..130415 (+) 1035 WP_015715015.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -
  PF977_RS00700 (PF977_00700) iolH 130435..131304 (+) 870 WP_015250852.1 sugar phosphate isomerase/epimerase family protein -
  PF977_RS00705 (PF977_00705) iolI 131390..132226 (+) 837 WP_015715014.1 2-keto-myo-inositol isomerase -
  PF977_RS00710 (PF977_00710) iolJ 132247..133119 (+) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  PF977_RS00715 (PF977_00715) braR 133227..133916 (+) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  PF977_RS00720 (PF977_00720) yxdK 133913..134890 (+) 978 WP_015715013.1 two-component system sensor histidine kinase YxdK -
  PF977_RS00725 (PF977_00725) yxdL 135033..135806 (+) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  PF977_RS00730 (PF977_00730) yxdM 135781..137649 (+) 1869 WP_015715012.1 ABC transporter permease YxdM -
  PF977_RS00735 (PF977_00735) yxeA 137663..138010 (+) 348 WP_015715011.1 YxeA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=706835 PF977_RS00715 WP_003243527.1 133227..133916(+) (braR) [Bacillus subtilis strain SRCM124333]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=706835 PF977_RS00715 WP_003243527.1 133227..133916(+) (braR) [Bacillus subtilis strain SRCM124333]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTCCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406