Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PF976_RS19640 Genome accession   NZ_CP116011
Coordinates   3799892..3800686 (-) Length   264 a.a.
NCBI ID   WP_013354215.1    Uniprot ID   A0A9P1JLP7
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3794892..3805686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS19620 (PF976_19620) - 3795013..3796431 (-) 1419 WP_014471292.1 sensor histidine kinase -
  PF976_RS19625 (PF976_19625) - 3796428..3797111 (-) 684 WP_013354212.1 response regulator transcription factor -
  PF976_RS19630 (PF976_19630) - 3797325..3798236 (+) 912 WP_013354213.1 PepSY domain-containing protein -
  PF976_RS19635 (PF976_19635) htrA 3798609..3799805 (-) 1197 WP_014472400.1 S1C family serine protease Regulator
  PF976_RS19640 (PF976_19640) vicX 3799892..3800686 (-) 795 WP_013354215.1 MBL fold metallo-hydrolase Regulator
  PF976_RS19645 (PF976_19645) - 3800702..3801541 (-) 840 WP_014472401.1 two-component system regulatory protein YycI -
  PF976_RS19650 (PF976_19650) yycH 3801528..3802886 (-) 1359 WP_014471294.1 two-component system activity regulator YycH -
  PF976_RS19655 (PF976_19655) walK 3802876..3804711 (-) 1836 WP_014471295.1 cell wall metabolism sensor histidine kinase WalK -
  PF976_RS19660 (PF976_19660) walR 3804718..3805425 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29116.16 Da        Isoelectric Point: 5.7992

>NTDB_id=706823 PF976_RS19640 WP_013354215.1 3799892..3800686(-) (vicX) [Bacillus amyloliquefaciens strain SRCM124317]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEQIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=706823 PF976_RS19640 WP_013354215.1 3799892..3800686(-) (vicX) [Bacillus amyloliquefaciens strain SRCM124317]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCCTTTCT
GGTGGATGCCGGCCTGAGCGGAAAAGCGATGGACGGGCTGATGGAGCAAATCGGCCGTAAGATAGACGACGTGGACGGCA
TCTTTGTCACTCATGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTTCCGGTATACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGACACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTCTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGTTATGTGAGCGACAGAATGAAGGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAACGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCAAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCACGCA
TCTACTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCAAAA
GGATTTGTCGCGGGGGAAACGTTTCAATTATTTGATACCGATCCGAAAATCCCGACGCCTCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JLP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527