Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   PF976_RS16285 Genome accession   NZ_CP116011
Coordinates   3130333..3132648 (-) Length   771 a.a.
NCBI ID   WP_147785975.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3125333..3137648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS16275 (PF976_16275) cysI 3126607..3128322 (-) 1716 WP_014471010.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  PF976_RS16280 (PF976_16280) - 3128350..3130158 (-) 1809 WP_147785976.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  PF976_RS16285 (PF976_16285) helD 3130333..3132648 (-) 2316 WP_147785975.1 RNA polymerase recycling motor HelD Machinery gene
  PF976_RS16290 (PF976_16290) - 3132817..3133425 (-) 609 WP_014472264.1 trimeric intracellular cation channel family protein -
  PF976_RS16295 (PF976_16295) - 3133648..3134448 (+) 801 WP_014471014.1 zinc-dependent metalloprotease -
  PF976_RS16300 (PF976_16300) - 3134482..3134901 (-) 420 WP_014471015.1 disulfide oxidoreductase -
  PF976_RS16305 (PF976_16305) - 3134891..3135562 (-) 672 WP_014471016.1 DsbA family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 88350.42 Da        Isoelectric Point: 6.1479

>NTDB_id=706803 PF976_RS16285 WP_147785975.1 3130333..3132648(-) (helD) [Bacillus amyloliquefaciens strain SRCM124317]
MAKRDEEWKEEQGRINFVMKELDQKETRLEASSGGLKQDIVGLRKTFWNDVTVNLDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKASPYFGRVDFTEKGESSSERIYIGLTSLMDENNDQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSENSGRHMKNIVSTIQKEQNEIIRDEKSKYLIVQGAAGSGKT
SVALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIARRLGRKFDCESPYEQLEYCLTE
QNQDALSVRLTAIAYKASSAFRTMIDRYAGSLSVSGLMCKQISFRGEILISKERIEDYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAQVYQKLKKQAADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRQLGFLDI
KRMYLRLFSDWGSYETPDQWQSIGALTRKAFAEQSLPYEDAAPYLYLQDLIEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
NIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLDDGDDIEPFNRNGEKPRLL
RADTEKARQEQLTETIRELRQKGWETIAVICKTAAEAKKVFQAVSVASDVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IVADASVTQYNSQHDRKLLYTACTRAMHHLTVLSPGETSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=706803 PF976_RS16285 WP_147785975.1 3130333..3132648(-) (helD) [Bacillus amyloliquefaciens strain SRCM124317]
ATGGCAAAACGTGATGAAGAATGGAAAGAAGAGCAGGGACGAATCAATTTTGTAATGAAAGAACTGGATCAGAAAGAAAC
GCGTCTTGAAGCATCATCGGGCGGATTGAAGCAGGATATTGTCGGCCTGCGAAAAACGTTCTGGAATGATGTCACCGTGA
ATTTGGATGACGCCCATGAAGCGGCGGAAACATTTTCAAGCATCAAACAGCAGGCGGAAATGCTTTCAGAGCGTGAACGG
ACGCATCGGCTTCAATATCGGCAGCTTCAAAAAATCCAAAAGCTGAAAGCCTCTCCCTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAATCTTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTGATGGACGAAAACAATGATCAATTTCTCA
TTTACGATTGGCGGGCGCCCATCTCATCTCTTTATTATCAATATTCCCCGGGAAAAGCCCGCTACGAAGTTCCGGAAGAA
ACCATAGAAGGCGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGGACGCTTAAAGCGATGTTCAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGAAAATTCCGGCCGGCATATGAAAAATATCGTGTCAACCATTC
AAAAAGAACAAAATGAAATCATCCGGGATGAAAAAAGTAAATATCTCATCGTTCAGGGAGCCGCCGGAAGCGGGAAAACA
TCCGTGGCGCTTCAGCGGGCCGCTTATTTGCTGTACCGGGGGCGCGGTGTGCTTGATGCCCGTCAGATTGTGCTGTTTTC
TCCGAACATTTTGTTCAACAGTTACGTTTCCGCCGTATTGCCGGAACTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCGCCCGCCGGCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTCGAATATTGCCTGACTGAG
CAAAATCAGGACGCGCTTTCCGTAAGGCTCACAGCCATCGCCTACAAAGCGTCATCAGCTTTCCGGACCATGATTGACCG
TTACGCCGGATCGCTTTCCGTCTCCGGCCTGATGTGTAAACAGATCAGCTTCCGGGGAGAAATACTGATTTCAAAAGAGC
GGATTGAAGATTACTTTTACTCACTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTT
GCGGAAATCAGCGCACTCGAAAAAAAGGAACGTAAGAAGGAATGGGTTCTGCAGGAGAGTGAGCTGCTCGATAAGGAAGA
CTATGCTCAGGTTTATCAAAAACTCAAGAAGCAAGCGGCGGATGATGAACCTGCTTTTGACGACCATCAGCGCGAACAGC
GGCTGCTTGGCGCCATCATTGTGGGAAAAGCTTTTAAGCCGATTAAGCAGGCCGTCAGACAGCTTGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGGATCATATGAAACGCCTGATCAATGGCAGAGCATCGGCGCTTTGAC
CCGGAAAGCGTTCGCAGAGCAGTCACTCCCATATGAAGATGCAGCTCCGTATCTTTATTTGCAGGATCTAATAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTATTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTGACGTATATTCAA
AACATCTTCCCAGCCGCGAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCACACCATCACGGGCCCTTC
TTCACTTGCCGGCTGCTTTCGCAACGGCGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGGTCGACGCGGCAGATTG
TTGAATTTACGAAAGCGCTGCTCGATGACGGTGATGACATTGAGCCTTTTAACCGGAACGGAGAAAAACCGCGTCTCCTG
CGGGCGGATACAGAAAAAGCGCGGCAGGAGCAATTGACGGAAACAATACGGGAGCTCAGGCAAAAAGGCTGGGAGACGAT
CGCCGTCATCTGCAAAACTGCCGCGGAAGCAAAAAAAGTATTTCAGGCGGTCAGCGTCGCAAGCGATGTCCGTTTGATCA
ATAAAGAAAATCAGCCTTTCCAAAAAGGGGTATGCGTCATTCCCGTGTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGTTGCTGACGCCTCTGTTACCCAGTACAATAGCCAGCATGACCGCAAGCTGTTATATACGGCCTGCACGCGGGCGAT
GCATCATCTGACCGTGCTGTCTCCCGGAGAAACTTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(217-580)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.104

99.87

0.66