Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   PF976_RS11670 Genome accession   NZ_CP116011
Coordinates   2267930..2269420 (-) Length   496 a.a.
NCBI ID   WP_147786066.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2262930..2274420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS11640 (PF976_11640) gudB 2263005..2264279 (-) 1275 WP_013352705.1 NAD-specific glutamate dehydrogenase -
  PF976_RS11645 (PF976_11645) - 2264441..2265025 (-) 585 WP_013352706.1 genetic competence negative regulator -
  PF976_RS11650 (PF976_11650) - 2265177..2265965 (-) 789 WP_013352707.1 metallophosphoesterase -
  PF976_RS11655 (PF976_11655) - 2266052..2266510 (-) 459 WP_013352708.1 YpbF family protein -
  PF976_RS11660 (PF976_11660) - 2266574..2267350 (-) 777 WP_271229889.1 LysM peptidoglycan-binding domain-containing protein -
  PF976_RS11665 (PF976_11665) - 2267328..2267915 (-) 588 WP_014470039.1 CPBP family intramembrane glutamic endopeptidase -
  PF976_RS11670 (PF976_11670) recS 2267930..2269420 (-) 1491 WP_147786066.1 RecQ family ATP-dependent DNA helicase Machinery gene
  PF976_RS11675 (PF976_11675) - 2269413..2270471 (-) 1059 WP_013352712.1 helix-turn-helix domain-containing protein -
  PF976_RS11680 (PF976_11680) - 2270741..2270989 (+) 249 WP_003153403.1 ferredoxin -
  PF976_RS11685 (PF976_11685) - 2271128..2271700 (-) 573 WP_013352713.1 ECF transporter S component -
  PF976_RS11690 (PF976_11690) serA 2272189..2273766 (+) 1578 WP_014470037.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55956.99 Da        Isoelectric Point: 5.9413

>NTDB_id=706761 PF976_RS11670 WP_147786066.1 2267930..2269420(-) (recS) [Bacillus amyloliquefaciens strain SRCM124317]
MTELHKALYRNFGLHSFKKGQEEIITSVLQKKDTIAMLPTGGGKSLCYQLPGYIMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSDERHFVLSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAIEHVADNAEKISRVTELAEKLEGPGIVYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTSDERKLRDVLISKGVQETQARTAIHLYLQGKTN
KEQLQEELTCRVEKKLHKMNRFSALLERKECIREALLAYFDESYEPEGPTGQCCSSCGMDLTPYEQKGERKNMERFEDLK
LELDRIFGLESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=706761 PF976_RS11670 WP_147786066.1 2267930..2269420(-) (recS) [Bacillus amyloliquefaciens strain SRCM124317]
ATGACTGAGCTGCACAAAGCTTTATACCGGAATTTTGGTTTGCATTCGTTTAAAAAAGGGCAGGAAGAAATCATCACCAG
CGTGCTTCAAAAGAAGGATACGATTGCCATGCTTCCGACAGGCGGGGGGAAATCATTATGCTATCAGCTTCCGGGTTACA
TAATGGACGGGCTGGTACTGATTATTTCACCTCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCTGACGAGCGGCATTTTGTCCTCAGCAACATCAGCCGTTACAA
ATTTCTTTATATGTCTCCTGAAGCCCTCTCGTCACCTTATGTGCTGAATCGTTTGAAAAACGTCCCGGTCAGTTTATTTG
TCATTGATGAGGCTCATTGCATATCAGAGTGGGGACATGATTTCAGGCCTGATTATTCAAAGCTCGGACCTTTCAGGCAA
GCACTCGGCAAGCCGCCTGTATTGGCGCTGACCGCGACAGCGACGAAAGAAACGCTCAGGGATGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGCCATCTATATTCGGTCAACCGGCCGAATATTCTCTTGGCGATTGAACATGTGGCTGATAATG
CCGAAAAAATCAGCAGGGTCACAGAGCTTGCCGAAAAGCTCGAGGGCCCGGGCATCGTATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCCGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGGGGAATGGATACAGGCGA
CAGGATATTAATTCAGCAGCAATTTATCCATAACCAGCTTGATTGCATTTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCTGATATCCGCTTTGTTATTCATTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGAAGAGCG
GGCCGCGACGGCAGCCCAAGTGTCAGTATTTTGCTGAGAGCGCCGGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGTTTGTCCGATTACGACCTGGAAGGCATTCTGGCCGTCATACGGGACGCCGGTACAAGCGATGAGCGAAAGCTTC
GGGATGTTCTGATAAGCAAGGGCGTTCAGGAAACACAGGCGCGAACGGCCATCCACCTGTACCTGCAAGGAAAAACCAAT
AAAGAGCAGCTGCAAGAAGAACTGACATGCCGCGTGGAAAAGAAGCTGCATAAAATGAACCGCTTTTCGGCGTTATTGGA
GCGGAAAGAATGTATAAGAGAAGCGCTATTAGCTTACTTTGATGAATCGTATGAGCCTGAAGGTCCAACCGGGCAATGCT
GCAGCAGCTGCGGAATGGATCTGACCCCATACGAGCAAAAAGGAGAACGGAAAAACATGGAGCGGTTTGAAGATTTGAAG
CTGGAATTAGACCGGATTTTCGGTTTAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(216-323)

DEAD/DEAH box helicase (DEAD)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

69.355

100

0.694