Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   PF976_RS10605 Genome accession   NZ_CP116011
Coordinates   2084843..2086621 (-) Length   592 a.a.
NCBI ID   WP_013352517.1    Uniprot ID   A0A9P1NHR8
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2079843..2091621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS10575 (PF976_10575) - 2079954..2080490 (-) 537 WP_013352511.1 DUF420 domain-containing protein -
  PF976_RS10580 (PF976_10580) - 2080636..2081418 (-) 783 WP_014470308.1 VLRF1 family aeRF1-type release factor -
  PF976_RS10585 (PF976_10585) - 2081609..2082112 (+) 504 WP_013352513.1 N-acetyltransferase -
  PF976_RS10590 (PF976_10590) - 2082178..2083155 (+) 978 WP_014471897.1 S66 family peptidase -
  PF976_RS10595 (PF976_10595) - 2083192..2083572 (-) 381 WP_013352515.1 hypothetical protein -
  PF976_RS10600 (PF976_10600) - 2083735..2084607 (-) 873 WP_013352516.1 3D domain-containing protein -
  PF976_RS10605 (PF976_10605) recQ 2084843..2086621 (-) 1779 WP_013352517.1 DNA helicase RecQ Machinery gene
  PF976_RS10615 (PF976_10615) - 2087133..2087759 (-) 627 WP_013352518.1 FMN-dependent NADH-azoreductase -
  PF976_RS10620 (PF976_10620) - 2087905..2088396 (-) 492 WP_271229887.1 TraR/DksA family transcriptional regulator -
  PF976_RS10625 (PF976_10625) - 2088479..2088859 (-) 381 WP_013352520.1 hypothetical protein -
  PF976_RS10630 (PF976_10630) - 2088952..2089185 (+) 234 WP_014471901.1 hypothetical protein -
  PF976_RS10635 (PF976_10635) - 2089172..2089654 (-) 483 WP_013352522.1 Hsp20/alpha crystallin family protein -
  PF976_RS10640 (PF976_10640) - 2089725..2089928 (+) 204 WP_013352523.1 hypothetical protein -
  PF976_RS10645 (PF976_10645) - 2089994..2090227 (+) 234 WP_013352524.1 hypothetical protein -
  PF976_RS10650 (PF976_10650) - 2090272..2090616 (-) 345 WP_003153783.1 PH domain-containing protein -
  PF976_RS10655 (PF976_10655) - 2091012..2091215 (-) 204 WP_007407979.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66897.33 Da        Isoelectric Point: 6.2133

>NTDB_id=706758 PF976_RS10605 WP_013352517.1 2084843..2086621(-) (recQ) [Bacillus amyloliquefaciens strain SRCM124317]
MLDKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPLISLMKDQVDALEE
AGIAAAYINSTQTSRDIHERLTGLKEGAYRLFYITPERLTSPEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFNELKEPPVIIALTATATPEVHDDICKQLHIHKEHTVYTGFARENLTFKVAKGENKDRFIEQYLDRNKHEAGIIYAATR
KETDRIYEKLKRSGINAGRYHGGLADDDRKEQQERFLNDQIQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLDSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDLKKLRQMVDYCHTEDCLQRFILKYFGESEAEACGACGNCTD
TRTAHDVTKEAQMVLSCIIRMNERFGKTMVAQVLNGSKNKKVLENGFSSLSTYGIMKHQTTGEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALEAAAVTENDELFEILRRLRKEIAAEQGVPPFVVFSDQTLKEMSAKLPKTDH
DLLSVKGVGEQKRLKYGALFLEEIRNYVRETE

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=706758 PF976_RS10605 WP_013352517.1 2084843..2086621(-) (recQ) [Bacillus amyloliquefaciens strain SRCM124317]
ATGCTGGATAAAGCCCAATCCCTCCTGGCGCATTATTTTGGCTACGACAGTCTTCGCGCGGGCCAAAAGCAGGCGATACA
ATCAGTTGCAGAGGAGAGAAAAAACACGGTCTGCATTATGCCGACGGGGGGCGGAAAATCAATCTGCTATCAGATTCCCG
CACTTCTGTTTGAAGGTACCACTATCGTTATTTCCCCTCTTATTTCCTTAATGAAAGATCAAGTCGACGCGCTTGAAGAA
GCGGGTATCGCGGCAGCTTATATTAACAGCACTCAGACAAGCCGGGACATTCATGAGCGACTGACCGGTTTGAAAGAAGG
GGCTTACCGGCTCTTTTACATAACACCGGAGCGTTTGACTTCTCCTGAATTCATTCACATCCTGCAGAATATTACGGTTC
CTCTTGTCGCCATAGACGAAGCTCACTGTATATCGCAATGGGGGCATGATTTCAGGCCGAGTTACCGGAATATTGAAATC
CTTTTTAATGAATTAAAAGAACCTCCCGTCATTATCGCGTTAACGGCGACGGCTACGCCTGAGGTTCATGATGATATCTG
CAAGCAGCTTCATATTCATAAAGAACATACTGTCTATACCGGTTTTGCCAGAGAGAATTTAACGTTCAAAGTAGCAAAGG
GCGAAAACAAAGACCGTTTTATCGAGCAGTACCTGGACAGAAATAAACACGAAGCCGGCATTATATATGCAGCGACCAGA
AAAGAAACCGACCGTATATATGAGAAATTAAAACGCAGCGGCATTAATGCCGGCCGTTATCACGGCGGATTGGCAGATGA
TGACAGAAAAGAGCAGCAGGAGCGGTTTCTTAACGATCAGATACAAGTAATGGTTGCCACGTCAGCTTTCGGAATGGGAA
TCGACAAGAGCAACATCAGATTCGTTCTCCACGCACAGATTCCAAAAGATATGGAGAGCTATTATCAGGAAGCCGGACGG
GCCGGGCGCGACGGTCTCGATAGCGAGTGCGTGCTCTTGTTTTCTCCGCAGGATATTATGGTGCAGCGCTTTTTAATAGA
CCAATCGGCAGCCGGAGAAGAAAAACAAAAGCAGGATCTCAAAAAACTGAGACAGATGGTGGATTACTGTCATACGGAAG
ATTGCCTGCAGCGGTTTATTCTGAAGTATTTCGGCGAGAGTGAGGCAGAAGCTTGCGGAGCATGCGGCAATTGCACTGAT
ACAAGGACAGCCCATGACGTCACAAAAGAAGCGCAGATGGTATTGTCATGTATTATCAGAATGAATGAGCGTTTCGGAAA
AACGATGGTCGCACAGGTGCTTAACGGGTCAAAAAATAAAAAAGTGCTGGAAAACGGCTTCAGCAGCCTGTCCACATACG
GCATTATGAAGCATCAAACAACAGGGGAAATCAGTGATTTTATCGAATTCCTGATTTCAGATGAATATATCAGAATGGCG
GACGGTACATTTCCGACGCTTATGGTCACACAAAAAGGCAGGGATGTTCTGCTTGGAAAGAGCGCAGTCGCGAGAAAAGA
AGCCTTAGAGGCCGCCGCCGTTACCGAAAACGATGAATTATTTGAGATTCTCCGGCGTCTCCGCAAAGAGATCGCAGCGG
AACAAGGCGTGCCTCCATTTGTCGTGTTCTCAGATCAGACGTTAAAAGAAATGTCGGCGAAACTTCCGAAAACAGATCAT
GATCTTCTTTCCGTAAAAGGGGTAGGGGAACAAAAAAGATTGAAATACGGAGCGCTTTTTTTAGAAGAAATCCGAAATTA
TGTAAGAGAAACAGAGTGA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(519-584)

DEAD/DEAH box helicase (DEAD)

(21-182)

RQC domain (RQC)

(404-508)

Helicase conserved C-terminal domain (Helicase_C)

(217-324)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NHR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

82.77

100

0.828