Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   PF976_RS03890 Genome accession   NZ_CP116011
Coordinates   741593..742309 (+) Length   238 a.a.
NCBI ID   WP_013351377.1    Uniprot ID   A0A9P1NGV6
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 736593..747309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS03860 (PF976_03860) - 736772..737149 (+) 378 WP_013351371.1 DUF1992 domain-containing protein -
  PF976_RS03865 (PF976_03865) - 737159..737590 (-) 432 WP_013351372.1 Hsp20/alpha crystallin family protein -
  PF976_RS03870 (PF976_03870) - 737606..737848 (-) 243 WP_013351373.1 spore germination protein -
  PF976_RS03875 (PF976_03875) - 737863..738123 (-) 261 WP_007408496.1 spore germination protein -
  PF976_RS03880 (PF976_03880) treP 738393..739808 (+) 1416 WP_014469890.1 PTS system trehalose-specific EIIBC component -
  PF976_RS03885 (PF976_03885) treC 739884..741569 (+) 1686 WP_013351376.1 alpha,alpha-phosphotrehalase -
  PF976_RS03890 (PF976_03890) treR 741593..742309 (+) 717 WP_013351377.1 trehalose operon repressor Regulator
  PF976_RS03895 (PF976_03895) - 742442..743107 (+) 666 WP_013351378.1 NAD(P)H-dependent oxidoreductase -
  PF976_RS03900 (PF976_03900) - 743142..743903 (-) 762 WP_013351379.1 YibE/F family protein -
  PF976_RS03905 (PF976_03905) - 743900..745039 (-) 1140 WP_013351380.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27440.54 Da        Isoelectric Point: 7.3799

>NTDB_id=706703 PF976_RS03890 WP_013351377.1 741593..742309(+) (treR) [Bacillus amyloliquefaciens strain SRCM124317]
MKVNKYITIYKDMVQQIESGMRKAEDVLPSENDLCDQYGASRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETKTTVHRLGLIPPPAEAAKELGTKADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEEELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=706703 PF976_RS03890 WP_013351377.1 741593..742309(+) (treR) [Bacillus amyloliquefaciens strain SRCM124317]
ATGAAAGTGAATAAATACATCACAATCTATAAAGACATGGTGCAGCAAATCGAAAGCGGCATGCGGAAGGCGGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCGCATCAAGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTTAAGGAGCTTTCGGAAACGCTCGGAAAAGAGACGAAAACGACGGTTCACCGTCTCGGGCTGATTCCGCC
TCCCGCCGAAGCCGCAAAAGAGCTTGGCACAAAGGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGGCGGATTGACG
GAGAACACATTATTTTGGACAAGGATTACTTTGTGAAAAAGCACGTTCCTCTTTTGACGAAGGCGATTTGCGAAGATTCG
ATTTACGAGTATCTCGAAGAAGAGCTCGGTCTGTCAATCAGCTACGCGCAAAAAGAAATTGTCGTGGAGCCGGCAGGGGA
AGAAGACCGAAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGTGTGTTTTTGGAGGACACCA
GCCTCTTTCAATATACGGAAAGCCGGCACAGGCTCGATAAATTTCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NGV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424