Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NLV76_RS14215 Genome accession   NZ_CP100752
Coordinates   2745591..2746337 (-) Length   248 a.a.
NCBI ID   WP_254501110.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2740591..2751337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS14190 (NLV76_14190) mreC 2740999..2741871 (-) 873 WP_254501106.1 rod shape-determining protein MreC -
  NLV76_RS14195 (NLV76_14195) mreB 2741902..2742915 (-) 1014 WP_254501107.1 cell shape-determining protein MreB -
  NLV76_RS14200 (NLV76_14200) radC 2743007..2743702 (-) 696 WP_254501108.1 DNA repair protein RadC -
  NLV76_RS14205 (NLV76_14205) - 2743740..2744309 (-) 570 WP_044154168.1 Maf family nucleotide pyrophosphatase -
  NLV76_RS14210 (NLV76_14210) - 2744460..2745458 (-) 999 WP_254501109.1 SPOR domain-containing protein -
  NLV76_RS14215 (NLV76_14215) comC 2745591..2746337 (-) 747 WP_254501110.1 A24 family peptidase Machinery gene
  NLV76_RS14220 (NLV76_14220) - 2746479..2747771 (-) 1293 WP_254501111.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NLV76_RS14225 (NLV76_14225) valS 2747831..2750473 (-) 2643 WP_254501112.1 valine--tRNA ligase -
  NLV76_RS14230 (NLV76_14230) - 2750921..2751112 (+) 192 WP_024122364.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26595.23 Da        Isoelectric Point: 9.7865

>NTDB_id=706701 NLV76_RS14215 WP_254501110.1 2745591..2746337(-) (comC) [Bacillus halotolerans strain MEC_B301]
MIPILFVLGLILGSFYYTVGCRIPLHISIISPRSACSFCRRTLTPTELIPVLSFILQKGNCKSCGQKLSLMYPAAELSTA
SLFAAAGFRFGLSWELIVALLFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYEGFIGAAVGFLLLAFI
AVITHGGIGGGDIKLFAVIGLVLGVKMLAAAFFFSVLIGALYGAAAVLFGRLARKQPLPFAPAIAAGSIFAYLYGDSIIS
FYVKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=706701 NLV76_RS14215 WP_254501110.1 2745591..2746337(-) (comC) [Bacillus halotolerans strain MEC_B301]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTATACGGTTGGATGCCGTATCCCCTTGCACAT
ATCCATCATAAGTCCGCGTTCGGCATGTTCCTTTTGCCGTCGAACCCTAACCCCGACGGAATTAATCCCTGTTTTATCTT
TTATTCTGCAAAAAGGCAATTGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTACCCGGCGGCAGAGCTCTCGACAGCG
AGTTTATTTGCAGCCGCGGGATTTCGTTTCGGTTTGTCTTGGGAACTAATTGTTGCGTTGCTGTTTCTTTCTCTTCTTAT
TATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTCTTTCTTGGTATGAAGGCTTTATAGGCGCGGCTGTGGGTTTTCTTTTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATATTAAATTATTTGCCGTTATCGGCCTTGTGCTTGGTGTAAAAAT
GCTTGCTGCCGCCTTTTTCTTTTCTGTTCTTATAGGCGCATTGTACGGAGCCGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGCTTCCCTTTGCACCGGCAATTGCGGCAGGAAGTATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAATGGCGTTAGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

81.048

100

0.81