Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   H7677_RS07495 Genome accession   NZ_AP023391
Coordinates   1531247..1532908 (-) Length   553 a.a.
NCBI ID   WP_044672057.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1526247..1537908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS07460 (DAT299_14350) - 1526324..1527583 (+) 1260 WP_044672053.1 hydroxymethylglutaryl-CoA reductase, degradative -
  H7677_RS07465 (DAT299_14360) - 1527605..1528072 (-) 468 WP_024416394.1 GNAT family N-acetyltransferase -
  H7677_RS07475 (DAT299_14370) - 1528561..1528836 (-) 276 WP_002936247.1 HU family DNA-binding protein -
  H7677_RS07480 (DAT299_14380) - 1528926..1529522 (-) 597 WP_002936249.1 YpmS family protein -
  H7677_RS07485 (DAT299_14390) - 1529494..1530327 (-) 834 WP_002936251.1 SGNH/GDSL hydrolase family protein -
  H7677_RS07490 (DAT299_14400) - 1530320..1531153 (-) 834 WP_002936253.1 DegV family protein -
  H7677_RS07495 (DAT299_14410) recN 1531247..1532908 (-) 1662 WP_044672057.1 DNA repair protein RecN Machinery gene
  H7677_RS07500 (DAT299_14420) - 1532911..1533336 (-) 426 WP_002936261.1 arginine repressor -
  H7677_RS07505 (DAT299_14430) - 1533329..1534150 (-) 822 WP_184493282.1 TlyA family RNA methyltransferase -
  H7677_RS07510 (DAT299_14440) - 1534143..1535012 (-) 870 WP_184493284.1 polyprenyl synthetase family protein -
  H7677_RS07515 (DAT299_14450) - 1535012..1535227 (-) 216 WP_024385023.1 exodeoxyribonuclease VII small subunit -
  H7677_RS07520 (DAT299_14460) xseA 1535202..1536545 (-) 1344 WP_029171943.1 exodeoxyribonuclease VII large subunit -
  H7677_RS07525 (DAT299_14470) - 1536712..1537620 (+) 909 WP_184493285.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62759.93 Da        Isoelectric Point: 4.6542

>NTDB_id=70670 H7677_RS07495 WP_044672057.1 1531247..1532908(-) (recN) [Streptococcus suis strain DAT299]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSSEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=70670 H7677_RS07495 WP_044672057.1 1531247..1532908(-) (recN) [Streptococcus suis strain DAT299]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGGGCAGGAAAGTCTATTATCATCGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGCCGTGAAATCCTACAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTAGTGAAGATATTCAACTCAATC
AGGAACGAGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACTAATGCCTATGCACTGTTAGACAATGAGGAT
TTTTCAAGCTTGAACAACCTCCGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTTGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCTTGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGCGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCAG
TTGTTTTAGAAGATATTATCCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCTACCAACCCAGGTGAAGACTTCAAACCACTGGT
TAAGGTAGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAGGAAGGCAAGACTT
CCATCGTCTTTGACGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45

Multiple sequence alignment