Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NLV76_RS13060 Genome accession   NZ_CP100752
Coordinates   2539370..2540137 (-) Length   255 a.a.
NCBI ID   WP_254500972.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2534370..2545137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS13040 (NLV76_13040) - 2534543..2535355 (-) 813 WP_044154519.1 pyruvate, water dikinase regulatory protein -
  NLV76_RS13045 (NLV76_13045) ccpN 2535381..2536019 (-) 639 WP_254500969.1 transcriptional regulator CcpN -
  NLV76_RS13050 (NLV76_13050) glyS 2536153..2538192 (-) 2040 WP_254500970.1 glycine--tRNA ligase subunit beta -
  NLV76_RS13055 (NLV76_13055) glyQ 2538185..2539072 (-) 888 WP_254500971.1 glycine--tRNA ligase subunit alpha -
  NLV76_RS13060 (NLV76_13060) recO 2539370..2540137 (-) 768 WP_254500972.1 DNA repair protein RecO Machinery gene
  NLV76_RS13065 (NLV76_13065) - 2540174..2540317 (-) 144 WP_024122087.1 YqzL family protein -
  NLV76_RS13070 (NLV76_13070) era 2540461..2541366 (-) 906 WP_254500973.1 GTPase Era -
  NLV76_RS13075 (NLV76_13075) cdd 2541347..2541757 (-) 411 WP_024122088.1 cytidine deaminase -
  NLV76_RS13080 (NLV76_13080) - 2541871..2542248 (-) 378 WP_254500974.1 diacylglycerol kinase family protein -
  NLV76_RS13085 (NLV76_13085) ybeY 2542229..2542702 (-) 474 WP_254500975.1 rRNA maturation RNase YbeY -
  NLV76_RS13090 (NLV76_13090) pgpH 2542703..2544838 (-) 2136 WP_254500976.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29316.99 Da        Isoelectric Point: 8.3105

>NTDB_id=706693 NLV76_RS13060 WP_254500972.1 2539370..2540137(-) (recO) [Bacillus halotolerans strain MEC_B301]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPEPNHCVHCKSQDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=706693 NLV76_RS13060 WP_254500972.1 2539370..2540137(-) (recO) [Bacillus halotolerans strain MEC_B301]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCCTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAACTCGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGACGAAGGAACAGACCCGGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCCTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCATCGCTGCTTTGATAAAGACCCTTACAAGGTGCCGATTAA
GCCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATCTTTCAAGGATTGGCAATGTGTCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.118

100

0.941