Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NLV76_RS11525 Genome accession   NZ_CP100752
Coordinates   2265401..2266021 (+) Length   206 a.a.
NCBI ID   WP_044155259.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2260401..2271021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS11485 (NLV76_11485) - 2261539..2262045 (-) 507 WP_044155315.1 PTS glucose transporter subunit IIA -
  NLV76_RS11490 (NLV76_11490) - 2262182..2262601 (+) 420 WP_254500804.1 Hsp20/alpha crystallin family protein -
  NLV76_RS11495 (NLV76_11495) - 2262623..2262997 (-) 375 WP_059352453.1 YppG family protein -
  NLV76_RS11500 (NLV76_11500) - 2263185..2263373 (+) 189 WP_044155293.1 YppF family protein -
  NLV76_RS11505 (NLV76_11505) - 2263408..2263779 (-) 372 WP_254500805.1 YppE family protein -
  NLV76_RS11510 (NLV76_11510) - 2263825..2264070 (-) 246 WP_044155280.1 DUF5446 family protein -
  NLV76_RS11515 (NLV76_11515) sspM 2264268..2264372 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  NLV76_RS11520 (NLV76_11520) - 2264398..2265360 (-) 963 WP_254500806.1 DUF2515 domain-containing protein -
  NLV76_RS11525 (NLV76_11525) recU 2265401..2266021 (+) 621 WP_044155259.1 Holliday junction resolvase RecU Machinery gene
  NLV76_RS11530 (NLV76_11530) - 2266043..2268787 (+) 2745 WP_254500807.1 PBP1A family penicillin-binding protein -
  NLV76_RS11535 (NLV76_11535) - 2268860..2269354 (-) 495 WP_059352451.1 YpoC family protein -
  NLV76_RS11540 (NLV76_11540) nth 2269351..2270010 (-) 660 WP_254500808.1 endonuclease III -
  NLV76_RS11545 (NLV76_11545) dnaD 2270029..2270727 (-) 699 WP_254500809.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23935.07 Da        Isoelectric Point: 9.6373

>NTDB_id=706681 NLV76_RS11525 WP_044155259.1 2265401..2266021(+) (recU) [Bacillus halotolerans strain MEC_B301]
MIRYPNGKTFQPKHPVSSQNSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEADRLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=706681 NLV76_RS11525 WP_044155259.1 2265401..2266021(+) (recU) [Bacillus halotolerans strain MEC_B301]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAGCAATCATCGACAACAGATTATAACGGAATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGCCAAGTTTATTTTTTAGAAGCCGATAGGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

96.117

100

0.961