Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NLV76_RS10725 Genome accession   NZ_CP100752
Coordinates   2131872..2133002 (+) Length   376 a.a.
NCBI ID   WP_254500649.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2126872..2138002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS10685 (NLV76_10685) - 2127085..2127453 (-) 369 WP_106294154.1 hypothetical protein -
  NLV76_RS10690 (NLV76_10690) - 2127630..2128373 (-) 744 WP_254500645.1 alpha/beta fold hydrolase -
  NLV76_RS10695 (NLV76_10695) - 2128818..2129048 (+) 231 WP_105955051.1 hypothetical protein -
  NLV76_RS21020 - 2129056..2129115 (-) 60 WP_255004945.1 hypothetical protein -
  NLV76_RS10700 (NLV76_10700) - 2129231..2129377 (-) 147 WP_306173880.1 UPF0715 family protein -
  NLV76_RS10705 (NLV76_10705) - 2129688..2129851 (-) 164 Protein_2064 helix-turn-helix domain-containing protein -
  NLV76_RS10710 (NLV76_10710) - 2130141..2130482 (-) 342 WP_254500647.1 hypothetical protein -
  NLV76_RS10715 (NLV76_10715) - 2130502..2130936 (-) 435 WP_254500648.1 hypothetical protein -
  NLV76_RS10720 (NLV76_10720) - 2131108..2131368 (+) 261 WP_082687961.1 hypothetical protein -
  NLV76_RS10725 (NLV76_10725) rapC 2131872..2133002 (+) 1131 WP_254500649.1 tetratricopeptide repeat protein Regulator
  NLV76_RS10730 (NLV76_10730) - 2132992..2133135 (+) 144 WP_162264507.1 hypothetical protein -
  NLV76_RS10735 (NLV76_10735) - 2133174..2133513 (-) 340 Protein_2070 UV damage repair protein UvrX -
  NLV76_RS10740 (NLV76_10740) ppsA 2133812..2136415 (-) 2604 WP_254500651.1 phosphoenolpyruvate synthase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44474.21 Da        Isoelectric Point: 5.7024

>NTDB_id=706680 NLV76_RS10725 WP_254500649.1 2131872..2133002(+) (rapC) [Bacillus halotolerans strain MEC_B301]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKRLALVTDEIERPEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIDRAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKALILYKKGIERAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSMLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=706680 NLV76_RS10725 WP_254500649.1 2131872..2133002(+) (rapC) [Bacillus halotolerans strain MEC_B301]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGACCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAGCTTAAAGGTGTCCTGGAATACTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGGTCATATAAAATTGCTGAGAAAAGGCTCGCTTTAGTAACAG
ATGAAATTGAACGACCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCCCATCTTCAGAGAGCCTTAAAAGACTCAAAAGCCATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAACTGTTATTATAAAATGAAAGAGTATGACAAAGCTGCT
GAATATATTGATCGAGCAGTCTCATTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTGATTCTTTATAAAAAAGGAATCGAGAGAGCACAAGCCATAAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTATGCTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.266

100

0.503
  rapF Bacillus subtilis subsp. subtilis str. 168

44.855

100

0.452