Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NLV76_RS08200 Genome accession   NZ_CP100752
Coordinates   1558392..1558670 (+) Length   92 a.a.
NCBI ID   WP_024121253.1    Uniprot ID   A0A9Q4EGS6
Organism   Bacillus halotolerans strain MEC_B301     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553392..1563670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS08180 (NLV76_08180) - 1554584..1555495 (+) 912 WP_254503335.1 ketopantoate reductase family protein -
  NLV76_RS08185 (NLV76_08185) - 1555523..1556755 (-) 1233 WP_254503336.1 aminopeptidase -
  NLV76_RS08190 (NLV76_08190) - 1556869..1557000 (-) 132 WP_069684699.1 protein YkpC -
  NLV76_RS08195 (NLV76_08195) mreBH 1557103..1558110 (-) 1008 WP_254503337.1 cell shape-determining protein MreBH -
  NLV76_RS08200 (NLV76_08200) abrB 1558392..1558670 (+) 279 WP_024121253.1 transcriptional regulator AbhA Regulator
  NLV76_RS08205 (NLV76_08205) - 1558861..1560147 (+) 1287 WP_254503338.1 ATP-binding protein -
  NLV76_RS08210 (NLV76_08210) - 1560163..1560993 (+) 831 WP_254503339.1 gamma-glutamylcyclotransferase -
  NLV76_RS08215 (NLV76_08215) ktrC 1561065..1561730 (+) 666 WP_254503340.1 Ktr system potassium transporter KtrC -
  NLV76_RS08220 (NLV76_08220) ade 1561887..1563620 (+) 1734 WP_254503341.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10284.12 Da        Isoelectric Point: 5.8872

>NTDB_id=706675 NLV76_RS08200 WP_024121253.1 1558392..1558670(+) (abrB) [Bacillus halotolerans strain MEC_B301]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVEGDKIILKKYKPHGICLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=706675 NLV76_RS08200 WP_024121253.1 1558392..1558670(+) (abrB) [Bacillus halotolerans strain MEC_B301]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCTATTAAAGACAGCATTGAGTTTTTTGTCGAGGGCGATAAAATTATTTTGAAAAAGTACAAACCTCATGGCATTT
GTTTAATGACTGGGGAAATCACTTCAGAAAATAAAGAGTACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGCGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

98.913

0.565