Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NLV76_RS05685 Genome accession   NZ_CP100752
Coordinates   1114541..1115119 (+) Length   192 a.a.
NCBI ID   WP_254502952.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1109541..1120119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS05665 (NLV76_05665) - 1110049..1111347 (-) 1299 WP_254502948.1 globin-coupled sensor protein -
  NLV76_RS05670 (NLV76_05670) - 1111488..1113017 (-) 1530 WP_254502949.1 FAD-dependent oxidoreductase -
  NLV76_RS05675 (NLV76_05675) - 1113129..1113986 (+) 858 WP_254502950.1 SDR family oxidoreductase -
  NLV76_RS05680 (NLV76_05680) - 1114015..1114248 (-) 234 WP_254502951.1 IDEAL domain-containing protein -
  NLV76_RS05685 (NLV76_05685) comK 1114541..1115119 (+) 579 WP_254502952.1 competence transcription factor ComK Regulator
  NLV76_RS05690 (NLV76_05690) - 1115164..1116063 (-) 900 WP_202656869.1 SDR family oxidoreductase -
  NLV76_RS05695 (NLV76_05695) - 1116275..1116544 (+) 270 WP_254502953.1 excalibur calcium-binding domain-containing protein -
  NLV76_RS05700 (NLV76_05700) - 1116585..1118054 (-) 1470 WP_254502954.1 sodium:solute symporter -
  NLV76_RS05705 (NLV76_05705) - 1118051..1118251 (-) 201 WP_010333642.1 DUF3311 domain-containing protein -
  NLV76_RS05710 (NLV76_05710) - 1118475..1118837 (-) 363 WP_044156501.1 hypothetical protein -
  NLV76_RS05715 (NLV76_05715) - 1118990..1119613 (+) 624 WP_069486341.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22432.76 Da        Isoelectric Point: 8.0255

>NTDB_id=706662 NLV76_RS05685 WP_254502952.1 1114541..1115119(+) (comK) [Bacillus halotolerans strain MEC_B301]
MSQKTDTPLESYEVNSATIAVLPEEIDGKICSKIIEKSCMFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPVSCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=706662 NLV76_RS05685 WP_254502952.1 1114541..1115119(+) (comK) [Bacillus halotolerans strain MEC_B301]
ATGAGTCAGAAAACTGACACACCATTAGAATCGTATGAAGTAAACAGCGCAACAATTGCCGTTTTGCCAGAAGAAATCGA
CGGCAAAATCTGTTCGAAAATCATTGAAAAATCCTGTATGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGATTTTTCGGATCAAGCTACGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCTCACAAACCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACTAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAACGGAAAAACGATGGAACTTC
CGGTCTCCTGCAATTCGTTCGAGAATCAGGTATACCGGACAGCCTGGCTCAGAACCAAATTTCAGGACAGAATCGAACAC
CGTGTCCCGAAACGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACTAAGATGATTTATGATTTTATTTTGCGTGA
GCTTGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

95.312

100

0.953