Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PE794_RS06070 Genome accession   NZ_CP115971
Coordinates   1328228..1328860 (+) Length   210 a.a.
NCBI ID   WP_005597987.1    Uniprot ID   A0ABM6X2Y8
Organism   Actinobacillus pleuropneumoniae strain HBS1     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1323228..1333860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE794_RS06060 (PE794_06060) purT 1324293..1325474 (-) 1182 WP_005597983.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  PE794_RS06065 (PE794_06065) plsB 1325597..1328071 (-) 2475 WP_005597985.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  PE794_RS06070 (PE794_06070) dinR/lexA 1328228..1328860 (+) 633 WP_005597987.1 transcriptional repressor LexA Regulator
  PE794_RS06075 (PE794_06075) mutH 1328920..1329600 (+) 681 WP_005597989.1 DNA mismatch repair endonuclease MutH -
  PE794_RS06080 (PE794_06080) - 1329686..1330417 (+) 732 WP_005597990.1 TerC family protein -
  PE794_RS06085 (PE794_06085) nagZ 1330532..1331569 (+) 1038 WP_043993299.1 beta-N-acetylhexosaminidase -
  PE794_RS06090 (PE794_06090) rlmC 1331650..1332825 (+) 1176 WP_005597991.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23350.73 Da        Isoelectric Point: 5.8460

>NTDB_id=706660 PE794_RS06070 WP_005597987.1 1328228..1328860(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain HBS1]
MSRKHLTARQQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVDNEETAAN
DDGLPLIGKVAAGTPIIAIEHVESHYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVDDE
VTVKRLEKKGDLIYLHPENDELQPIIVDPRIEYIEIEGIAVGVIRNNAWM

Nucleotide


Download         Length: 633 bp        

>NTDB_id=706660 PE794_RS06070 WP_005597987.1 1328228..1328860(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain HBS1]
ATGTCACGTAAACACTTAACGGCTCGTCAGCAAGAAATTTTTGATTTTGTTAAACATCACATAGAAACCACCGGTATGCC
GCCGACTCGTGTTGAAATTGCAAGAGAAATCGGTTTTAAATCGCCGAATGCGGCAGAAGAACACTTAAAAGCATTGGCGC
GTAAAGGTTATATCGAAATGCTTTCCGGTACATCGCGCGGAATTCGTATTTTAGTCGATAACGAAGAAACTGCGGCAAAT
GACGATGGTTTACCGTTAATCGGCAAAGTGGCTGCCGGTACGCCGATTATAGCGATTGAACATGTGGAAAGTCATTATCC
GGTAAACGGCGCGATGTTTAATCCGAATGCCGACTATTTGCTCAAAGTAAACGGTAACTCCATGGAAAAAATCGGTATTT
TAGACGGTGACTTACTTGCGGTGCATAAAACCAATTTTGCCCGTAACGGCCAAGTCGTCGTCGCTCGCGTTGATGACGAA
GTGACCGTAAAACGCTTGGAGAAAAAAGGCGATCTTATTTATCTTCATCCTGAAAATGACGAGTTACAACCGATTATTGT
CGATCCTCGTATCGAATATATCGAAATTGAAGGAATCGCCGTCGGTGTAATTCGCAATAACGCTTGGATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-67)

Peptidase S24-like (Peptidase_S24)

(85-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.864

98.095

0.371