Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   PE794_RS03815 Genome accession   NZ_CP115971
Coordinates   837337..838284 (+) Length   315 a.a.
NCBI ID   WP_005597088.1    Uniprot ID   A0ABM6X1S0
Organism   Actinobacillus pleuropneumoniae strain HBS1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 832337..843284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE794_RS03790 (PE794_03790) lysC 832495..833847 (+) 1353 WP_005597077.1 lysine-sensitive aspartokinase 3 -
  PE794_RS03795 (PE794_03795) nrdR 833973..834422 (-) 450 WP_005597079.1 transcriptional regulator NrdR -
  PE794_RS03800 (PE794_03800) - 834422..834709 (-) 288 WP_192876864.1 YcgL domain-containing protein -
  PE794_RS03805 (PE794_03805) - 834699..836162 (-) 1464 WP_005618968.1 replicative DNA helicase -
  PE794_RS03810 (PE794_03810) - 836342..837250 (+) 909 WP_005597086.1 siderophore ABC transporter substrate-binding protein -
  PE794_RS03815 (PE794_03815) ceuB 837337..838284 (+) 948 WP_005597088.1 ABC transporter permease Machinery gene
  PE794_RS03820 (PE794_03820) - 838284..839225 (+) 942 WP_005597090.1 iron chelate uptake ABC transporter family permease subunit -
  PE794_RS03825 (PE794_03825) - 839227..839985 (+) 759 WP_005597092.1 ABC transporter ATP-binding protein -
  PE794_RS03830 (PE794_03830) - 840174..840854 (+) 681 WP_005597094.1 TIGR00153 family protein -
  PE794_RS03835 (PE794_03835) - 840864..842126 (+) 1263 WP_005597096.1 inorganic phosphate transporter -
  PE794_RS03840 (PE794_03840) - 842190..842795 (+) 606 WP_005597098.1 TIGR04211 family SH3 domain-containing protein -
  PE794_RS03845 (PE794_03845) - 842848..843075 (-) 228 WP_005597100.1 sulfurtransferase TusA family protein -

Sequence


Protein


Download         Length: 315 a.a.        Molecular weight: 34340.51 Da        Isoelectric Point: 9.6890

>NTDB_id=706646 PE794_RS03815 WP_005597088.1 837337..838284(+) (ceuB) [Actinobacillus pleuropneumoniae strain HBS1]
MQKLTALNFLFLVLLFLLSISVGVADFQWRDLFTHTEQLELLFISRLPRTLAVVLVGATLGIAGMVLQIVLKNRFIEPSM
IGASQSAAIGILIVSLMFPATPLIMKMSFATLSALIGMGIFMLLLRRLPPHQKLMVPLIGIVFGNIIEAITTFVAYETDS
LQLLSVWFSGDFSGILAGRYELLWLTAGLAVLVYIMAEQLSIAGLGQNISTSLGINYRQMTWFALIVVAMITAVVVVTVG
QIPFIGLVVPNIISRLAGDRLRQNLPSVALLGANLVLLCDIIGRVVNAPYEVPISTIFGICGTVVFLYLLFRGKK

Nucleotide


Download         Length: 948 bp        

>NTDB_id=706646 PE794_RS03815 WP_005597088.1 837337..838284(+) (ceuB) [Actinobacillus pleuropneumoniae strain HBS1]
ATGCAAAAACTAACCGCTTTAAATTTTTTATTTCTGGTCTTACTTTTTCTATTGAGTATTTCAGTAGGGGTTGCCGATTT
CCAATGGAGAGATCTTTTCACTCATACCGAACAGCTTGAATTACTTTTTATCAGTCGATTACCCAGAACGCTTGCCGTTG
TACTTGTCGGTGCCACACTTGGTATTGCCGGAATGGTACTTCAAATCGTACTTAAAAATCGTTTTATTGAACCCAGTATG
ATTGGAGCCAGCCAAAGTGCGGCAATCGGTATCTTAATTGTCAGCTTAATGTTTCCTGCCACACCGCTTATTATGAAAAT
GTCCTTTGCAACGTTAAGCGCATTAATCGGTATGGGGATTTTTATGCTGCTGCTTCGTCGATTACCCCCCCATCAAAAGT
TGATGGTTCCGCTCATCGGAATCGTATTCGGTAATATTATTGAGGCCATTACTACTTTCGTCGCATACGAAACCGACTCT
TTACAATTATTATCCGTTTGGTTCTCAGGCGACTTTTCCGGTATCTTAGCAGGGCGTTACGAATTATTATGGCTAACAGC
CGGGCTGGCCGTCCTTGTATATATTATGGCGGAACAACTCAGCATTGCCGGATTAGGTCAAAATATCAGTACCAGTTTAG
GTATCAATTACCGCCAAATGACTTGGTTTGCGTTAATTGTGGTTGCAATGATTACCGCGGTGGTTGTAGTTACGGTCGGA
CAAATTCCGTTTATCGGATTAGTTGTACCTAATATCATTTCTCGTTTAGCCGGTGACCGTTTACGCCAGAATTTACCTTC
AGTAGCATTACTCGGCGCGAACTTAGTCTTACTTTGTGACATTATCGGACGTGTGGTCAATGCGCCTTATGAAGTACCTA
TCTCGACCATCTTCGGGATTTGCGGAACGGTTGTTTTTCTCTATTTACTGTTTAGAGGGAAAAAATAA

Domains


Predicted by InterProScan.

(12-312)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.342

100

0.375