Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H7677_RS05440 Genome accession   NZ_AP023391
Coordinates   1100483..1102291 (-) Length   602 a.a.
NCBI ID   WP_184492978.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1095483..1107291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS05420 (DAT299_10340) murB 1096042..1096950 (-) 909 WP_015646881.1 UDP-N-acetylmuramate dehydrogenase -
  H7677_RS05425 (DAT299_10350) thrB 1097184..1098044 (-) 861 WP_105095087.1 homoserine kinase -
  H7677_RS05430 (DAT299_10360) - 1098048..1099334 (-) 1287 WP_105095088.1 homoserine dehydrogenase -
  H7677_RS05435 (DAT299_10370) - 1099439..1100362 (+) 924 WP_184492976.1 polysaccharide deacetylase family protein -
  H7677_RS05440 (DAT299_10380) rcrQ 1100483..1102291 (-) 1809 WP_184492978.1 ABC transporter ATP-binding protein Regulator
  H7677_RS05445 (DAT299_10390) rcrP 1102300..1104036 (-) 1737 WP_184492980.1 ABC transporter ATP-binding protein Regulator
  H7677_RS05450 (DAT299_10400) - 1104112..1104354 (-) 243 WP_012028079.1 KH domain-containing protein -
  H7677_RS05455 (DAT299_10410) rpsP 1104376..1104648 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  H7677_RS05460 (DAT299_10420) - 1104772..1105080 (-) 309 WP_172060266.1 DUF4298 domain-containing protein -
  H7677_RS05465 (DAT299_10430) pcp 1105080..1105727 (-) 648 WP_024390332.1 pyroglutamyl-peptidase I -
  H7677_RS05470 (DAT299_10440) - 1105724..1106479 (-) 756 WP_105243240.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67210.48 Da        Isoelectric Point: 5.4043

>NTDB_id=70658 H7677_RS05440 WP_184492978.1 1100483..1102291(-) (rcrQ) [Streptococcus suis strain DAT299]
MKNRSVFTRVWDYLRRYQSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGVQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCLWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGCLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQKVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFENVEFGYSEDKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDAIDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSQSNTLRKSKADVVDLI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=70658 H7677_RS05440 WP_184492978.1 1100483..1102291(-) (rcrQ) [Streptococcus suis strain DAT299]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACCAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAAACCATCAGTGCAGTTATGAATGCCTTAGAACCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGATATTGCTAATGGAGTAGAAGGAGTGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGACTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTGTCGAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTCTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTAGGTTGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTTTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGAAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTTATGCCTTTAGTTCACGGTTTTTCTAATAT
TGCCTATGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTACAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCCTAGATGAGCTTGATGAAGAAGACGCCAATGCGCTTGAGTTGACAGAAAGTCTGACTGG
ACAAGTTAGCTTCGAAAATGTCGAATTTGGTTATTCAGAAGACAAGCCGCTCATCCGTAACTTTAATCTGGATGTTCAAC
CCGGTGAGATGGTGGCCATCGTTGGTCCAACAGGGGCAGGTAAGACTACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGCAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGATAGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGTCAGTTTAGTCA
ATCTAATACTCTTCGAAAATCAAAAGCAGACGTTGTTGACTTGATTTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.22

98.007

0.424

Multiple sequence alignment