Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   H7677_RS05445 Genome accession   NZ_AP023391
Coordinates   1102300..1104036 (-) Length   578 a.a.
NCBI ID   WP_184492980.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1097300..1109036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS05430 (DAT299_10360) - 1098048..1099334 (-) 1287 WP_105095088.1 homoserine dehydrogenase -
  H7677_RS05435 (DAT299_10370) - 1099439..1100362 (+) 924 WP_184492976.1 polysaccharide deacetylase family protein -
  H7677_RS05440 (DAT299_10380) rcrQ 1100483..1102291 (-) 1809 WP_184492978.1 ABC transporter ATP-binding protein Regulator
  H7677_RS05445 (DAT299_10390) rcrP 1102300..1104036 (-) 1737 WP_184492980.1 ABC transporter ATP-binding protein Regulator
  H7677_RS05450 (DAT299_10400) - 1104112..1104354 (-) 243 WP_012028079.1 KH domain-containing protein -
  H7677_RS05455 (DAT299_10410) rpsP 1104376..1104648 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  H7677_RS05460 (DAT299_10420) - 1104772..1105080 (-) 309 WP_172060266.1 DUF4298 domain-containing protein -
  H7677_RS05465 (DAT299_10430) pcp 1105080..1105727 (-) 648 WP_024390332.1 pyroglutamyl-peptidase I -
  H7677_RS05470 (DAT299_10440) - 1105724..1106479 (-) 756 WP_105243240.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65078.39 Da        Isoelectric Point: 5.1942

>NTDB_id=70659 H7677_RS05445 WP_184492980.1 1102300..1104036(-) (rcrP) [Streptococcus suis strain DAT299]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLLNLTGLTE
PLFVQIIIAMIVAIVWFALAPLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
EGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=70659 H7677_RS05445 WP_184492980.1 1102300..1104036(-) (rcrP) [Streptococcus suis strain DAT299]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTATTTGTAGT
GGTAAACTTAGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAGTTA
ACTACAAATATCGTCAAGGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTAAAACTAG
GTATTATTACCCCCTTGATGATGATTGCTTCTGTCATCATGACATTGGTAACCAGTCCGAGCTTAGCCTGGACAGTAGCA
GTAGCCATGCCGTTTCTAGTTTTTGTTATTTTCTATGTGGCAACAAAAACTCGTCCTCTCTCTGAAAAACAACAAAAACG
TTTGGACACCATTAACCAATATGTTCGTGAAAATCTCATGGGCTTGCGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCCTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAAATTATCATTGCTATGATTGTAGCCATTGTCTGGTTCGCATTGGCTCCTTTGCAAACAGGTAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCCCTTTTCTCCTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCGCGTATGTCGGTGTCTAGCCAGCGAATTCAAGAAGTCTTGGATATGCCTATCTCTATTTCTAAGAATGAA
GAAGGTATTACTGAAACAGACACTCGTGGTTATCTGGAATTTGAGAATGTGACCTTTGCCTACCCTGGTGAAACAGAGTC
GCCTGTGCTGCACAATATTTCCTTCAAAGCCAAACCAGGTGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCTCGTTTCTATGATGTAACTCTAGGACGAATCTTGGTGGACGGTGTGGATGTCAGACGT
TACAATCTAAAGGCACTCCGCAGCAAGATAGGCTTTATTCCACAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CCTCAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGTGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAACAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
GATTTTGAGGAGTCGTTTGAAGGAAGTGACGGAAAATGCAACGGTGCTAATTGTGGCCCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCTCTGACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398

Multiple sequence alignment