Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   PIB26_RS05385 Genome accession   NZ_CP115968
Coordinates   1123043..1124035 (+) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain B-DidR     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1118043..1129035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB26_RS05355 ispD 1118104..1118814 (+) 711 WP_000246144.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PIB26_RS05360 ispF 1118814..1119293 (+) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PIB26_RS05365 truD 1119290..1120339 (+) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  PIB26_RS05370 surE 1120320..1121081 (+) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  PIB26_RS05375 pcm 1121075..1121701 (+) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  PIB26_RS05380 nlpD 1121886..1122980 (+) 1095 WP_224692580.1 murein hydrolase activator NlpD -
  PIB26_RS05385 rpoS 1123043..1124035 (+) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  PIB26_RS05390 ygbN 1124129..1125493 (-) 1365 WP_000104459.1 GntP family transporter -
  PIB26_RS05395 ygbM 1125582..1126358 (-) 777 WP_001136925.1 HPr family phosphocarrier protein -
  PIB26_RS05400 ygbL 1126363..1127001 (-) 639 WP_001278994.1 aldolase -
  PIB26_RS05405 otnK 1126998..1128260 (-) 1263 WP_000590371.1 3-oxo-tetronate kinase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=706571 PIB26_RS05385 WP_000081550.1 1123043..1124035(+) (rpoS) [Escherichia coli strain B-DidR]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=706571 PIB26_RS05385 WP_000081550.1 1123043..1124035(+) (rpoS) [Escherichia coli strain B-DidR]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715