Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   PIB26_RS04185 Genome accession   NZ_CP115968
Coordinates   866603..867835 (-) Length   410 a.a.
NCBI ID   WP_001153640.1    Uniprot ID   Q072Q7
Organism   Escherichia coli strain B-DidR     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 861603..872835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB26_RS04165 - 862243..862940 (+) 698 WP_094096600.1 IS1-like element IS1A family transposase -
  PIB26_RS04170 - 863052..863642 (+) 591 WP_000405439.1 SDR family oxidoreductase -
  PIB26_RS04175 - 864216..865355 (+) 1140 WP_000069818.1 hypothetical protein -
  PIB26_RS04180 - 865390..866349 (+) 960 WP_000991482.1 hypothetical protein -
  PIB26_RS04185 kpsS 866603..867835 (-) 1233 WP_001153640.1 capsule biosynthesis protein Regulator
  PIB26_RS04190 - 867870..869897 (-) 2028 WP_000579244.1 capsular polysaccharide biosynthesis protein -
  PIB26_RS04195 kdsB 869894..870634 (-) 741 WP_000030740.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PIB26_RS04200 - 870644..872320 (-) 1677 WP_012767757.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 49050.74 Da        Isoelectric Point: 10.0880

>NTDB_id=706566 PIB26_RS04185 WP_001153640.1 866603..867835(-) (kpsS) [Escherichia coli strain B-DidR]
MQDNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLDRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYKGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKLD
KYFQSLSRQV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=706566 PIB26_RS04185 WP_001153640.1 866603..867835(-) (kpsS) [Escherichia coli strain B-DidR]
ATGCAAGACAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGACCGTAACGCTGTGAATGTTGTCTTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGTTGGCTGCGAGATCTCCACCGACAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGACCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCGTGGTATGAAGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATATACGTGCACGATCTCCCAATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATAAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTGTTGGTTAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAACTGGAT
AAATATTTTCAGAGCTTGTCGCGTCAAGTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q072Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

96.585

0.383