Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   H7677_RS05120 Genome accession   NZ_AP023391
Coordinates   1034270..1034938 (+) Length   222 a.a.
NCBI ID   WP_044667738.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1029270..1039938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS05085 (DAT299_09650) - 1029286..1030020 (+) 735 WP_184494354.1 TraX family protein -
  H7677_RS05090 (DAT299_09660) - 1030119..1030259 (+) 141 WP_002935023.1 hypothetical protein -
  H7677_RS05095 (DAT299_09670) - 1030272..1030661 (+) 390 WP_184494356.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  H7677_RS05100 (DAT299_09680) - 1030670..1031422 (+) 753 WP_015646831.1 ABC transporter ATP-binding protein -
  H7677_RS05105 (DAT299_09690) - 1031423..1033393 (+) 1971 WP_184494358.1 ABC transporter permease -
  H7677_RS05110 (DAT299_09700) relB 1033736..1033975 (+) 240 WP_015646833.1 type II toxin-antitoxin system RelB family antitoxin -
  H7677_RS05115 (DAT299_09710) - 1034016..1034231 (+) 216 WP_371314982.1 type II toxin-antitoxin system RelE family toxin -
  H7677_RS05120 (DAT299_09720) braR 1034270..1034938 (+) 669 WP_044667738.1 DNA-binding response regulator Regulator
  H7677_RS05125 (DAT299_09730) - 1034935..1035876 (+) 942 WP_184494360.1 sensor histidine kinase -
  H7677_RS05130 (DAT299_09740) - 1035952..1037460 (+) 1509 WP_184494362.1 phosphomannomutase/phosphoglucomutase -
  H7677_RS05135 (DAT299_09750) xerS 1037523..1038593 (-) 1071 WP_184494364.1 tyrosine recombinase XerS Machinery gene
  H7677_RS10565 (DAT299_09770) - 1038952..1039155 (-) 204 WP_232089016.1 adenylyl-sulfate kinase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25576.44 Da        Isoelectric Point: 4.7736

>NTDB_id=70655 H7677_RS05120 WP_044667738.1 1034270..1034938(+) (braR) [Streptococcus suis strain DAT299]
MMKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFI
SSSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSNELEQVQLSPTETKIL
SALLERQGQIVSKDELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=70655 H7677_RS05120 WP_044667738.1 1034270..1034938(+) (braR) [Streptococcus suis strain DAT299]
ATGATGAAAAAAGAAAAGATTTATATTGTTGAAGACGATGAGATGATTGTCCAACTCTTGAAGCAGCATCTGGGAAAATC
GTATCAAGTGGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTGGCGGAAATTAAACCAGACTTAGTGCTGATGG
ACATTAGCCTGCCTTATTACAACGGCTTTTACTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATC
TCCTCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTTTCCAAGCCTTTTTCACT
AGGGATTTTGGATGCCAAAATCGGAGCCTTCCTGCGTCGGGTTAATCAATTCAGCAAATCAACTGATTTGTCAATTGACC
AGTTCCAACTTAGTTTAGACGGGCGATTTTCAAACGAATTGGAACAGGTTCAATTGTCTCCTACGGAAACCAAGATTTTG
TCCGCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGATGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTAT
CGACCAGAATACGCTCAATGTAAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACCG
TTCGTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-220)

Response regulator receiver domain (Response_reg)

(7-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.273

99.099

0.468

Multiple sequence alignment