Detailed information NTG0706514

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP06_RS19225
• Genome accession: NZ_CP115964
• Coordinates: 4122498..4123502 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain LYSZa2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4117498..4128502

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP06_RS19195 (PCP06_19190)	fghA	4117590..4118441 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PCP06_RS19200 (PCP06_19195)	ispF	4118512..4118985 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP06_RS19205 (PCP06_19200)	truD	4118982..4120049 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PCP06_RS19210 (PCP06_19205)	surE	4120037..4120786 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP06_RS19215 (PCP06_19210)	-	4120819..4121454 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP06_RS19220 (PCP06_19215)	-	4121500..4122393 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP06_RS19225 (PCP06_19220)	rpoS	4122498..4123502 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP06_RS19230 (PCP06_19225)	fdxA	4123928..4124251 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP06_RS19235 (PCP06_19230)	mutS	4124318..4126885 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP06_RS19240 (PCP06_19235)	-	4127011..4128018 (-)	1008	WP_031640472.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=706514 PCP06_RS19225 WP_003113871.1 4122498..4123502(+) (rpoS) [Pseudomonas aeruginosa strain LYSZa2]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=706514 PCP06_RS19225 WP_003113871.1 4122498..4123502(+) (rpoS) [Pseudomonas aeruginosa strain LYSZa2]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653