Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PCP06_RS05575 Genome accession   NZ_CP115964
Coordinates   1174709..1176202 (+) Length   497 a.a.
NCBI ID   WP_003094357.1    Uniprot ID   A0A0H2ZGR9
Organism   Pseudomonas aeruginosa strain LYSZa2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1169709..1181202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP06_RS05545 (PCP06_05540) - 1169921..1170730 (-) 810 WP_003094343.1 ABC transporter ATP-binding protein -
  PCP06_RS05550 (PCP06_05545) kdsD 1171144..1172124 (+) 981 WP_003094347.1 arabinose-5-phosphate isomerase KdsD -
  PCP06_RS05555 (PCP06_05550) - 1172124..1172663 (+) 540 WP_003098849.1 HAD family hydrolase -
  PCP06_RS05560 (PCP06_05555) lptC 1172672..1173244 (+) 573 WP_003094353.1 LPS export ABC transporter periplasmic protein LptC -
  PCP06_RS05565 (PCP06_05560) lptA 1173231..1173758 (+) 528 WP_003120916.1 lipopolysaccharide transport periplasmic protein LptA -
  PCP06_RS05570 (PCP06_05565) lptB 1173758..1174483 (+) 726 WP_003094355.1 LPS export ABC transporter ATP-binding protein -
  PCP06_RS05575 (PCP06_05570) rpoN/rpoN1 1174709..1176202 (+) 1494 WP_003094357.1 RNA polymerase factor sigma-54 Machinery gene
  PCP06_RS05580 (PCP06_05575) raiA 1176280..1176588 (+) 309 WP_003094359.1 ribosome-associated translation inhibitor RaiA -
  PCP06_RS05585 (PCP06_05580) ptsN 1176602..1177066 (+) 465 WP_003098853.1 PTS IIA-like nitrogen regulatory protein PtsN -
  PCP06_RS05590 (PCP06_05585) rapZ 1177068..1177928 (+) 861 WP_003094361.1 RNase adapter RapZ -
  PCP06_RS05595 (PCP06_05590) - 1177958..1178230 (+) 273 WP_003094362.1 HPr family phosphocarrier protein -
  PCP06_RS05600 (PCP06_05595) - 1178327..1179259 (-) 933 WP_003120918.1 ZIP family metal transporter -
  PCP06_RS05605 (PCP06_05600) - 1179278..1179889 (-) 612 WP_023132281.1 superoxide dismutase -
  PCP06_RS05610 (PCP06_05605) - 1179902..1180351 (-) 450 WP_207858609.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56054.22 Da        Isoelectric Point: 4.4327

>NTDB_id=706455 PCP06_RS05575 WP_003094357.1 1174709..1176202(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain LYSZa2]
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSDPLADGAEQAASAPQESPLQE
SATPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLPSNDDDEWDFTARTSSGESLHSHLLWQVNLAPMSDTDRMIA
VTIIDSINNDGYLEESLEEILAAIDPELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPSTTPWLNEALRLV
SDYLDLLGGRDYSQLMRRMKLKEDELRQVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVELNQEAMPRLRVN
ATYAGMVRRADSSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHEST
ISRVTTQKYMHTPRGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=706455 PCP06_RS05575 WP_003094357.1 1174709..1176202(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain LYSZa2]
ATGAAACCATCGCTAGTCCTCAAGATGGGCCAGCAGCTGACGATGACGCCGCAGCTGCAACAGGCCATACGCCTCCTCCA
GCTATCCACCCTGGACCTCCAGCAGGAAATCCAGGAAGCGCTGGAATCCAATCCCATGCTCGAACGCCAGGAAGACGGCG
ACGATTTCGACAACAGCGACCCTCTCGCCGATGGCGCCGAACAGGCGGCCAGCGCGCCCCAGGAGAGCCCCCTCCAGGAA
AGCGCCACGCCCAGCGTCGAAAGCCTCGACGACGACCAGTGGAGCGAACGCATACCCAGCGAGTTGCCGGTGGATACCGC
CTGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCCAGCAACGACGATGACGAGTGGGACTTCACCGCGCGCACCA
GCAGCGGCGAGAGCCTGCACAGCCACCTGCTCTGGCAGGTCAACCTGGCACCGATGTCGGACACCGATCGGATGATCGCG
GTGACCATCATCGATAGCATCAACAACGATGGCTACCTCGAAGAGTCCCTCGAAGAAATCCTCGCCGCCATCGATCCGGA
ACTGGACGTCGAGCTCGACGAAGTGGAAGTCGTGCTGCGCCGCATCCAGCAACTGGAACCCGCCGGCATCGGCGCCCGCA
ACCTGCGCGAGTGCCTGCTGCTGCAACTGCGCCAGTTGCCGTCCACCACGCCCTGGCTGAACGAAGCGCTGCGCCTGGTA
TCCGACTACCTCGACCTGCTCGGCGGCCGCGACTACAGCCAATTGATGCGGCGCATGAAGCTCAAGGAAGACGAACTGCG
CCAGGTCATCGAGCTGATCCAGTGCCTGCATCCCCGGCCCGGTTCGCAGATCGAATCGAGCGAAGCCGAATACATCGTCC
CCGACGTCATCGTGCGCAAGGACAACGAGCGCTGGCTGGTCGAGCTGAACCAGGAGGCGATGCCACGCCTGCGCGTCAAC
GCCACCTACGCCGGCATGGTCCGCCGCGCCGACAGCAGCGCCGACAATACCTTCATGCGCAACCAGTTGCAGGAAGCCCG
CTGGTTCATCAAGAGCCTGCAGAGCCGCAACGAAACGCTGATGAAGGTCGCCACCCAGATCGTCGAGCACCAGCGCGGCT
TCCTCGACTACGGCGAAGAAGCCATGAAGCCGCTGGTCCTGCACGACATCGCCGAAGCGGTGGGCATGCACGAATCGACC
ATTTCGCGGGTCACCACGCAGAAATACATGCATACGCCGCGCGGCATTTTCGAGCTGAAATATTTCTTTTCAAGTCACGT
CAGTACCGCCGAAGGCGGGGAATGCTCGTCCACCGCGATCCGCGCGATCATCAAGAAACTGGTGGCCGCGGAAAATGCGA
AAAAGCCATTGAGCGACAGCAAGATCGCTGGTTTACTGGAGGCACAGGGCATTCAAGTGGCTCGCCGCACCGTCGCCAAA
TACCGCGAATCCCTGGGCATAGCCCCTTCGAGCGAGCGCAAGCGACTGGTGTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.654

100

0.477