Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NL733_RS13915 Genome accession   NZ_CP100710
Coordinates   2839955..2840560 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Blockley strain R18.0186     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2834955..2845560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL733_RS13900 (NL733_13900) helD 2835172..2837226 (-) 2055 WP_064047382.1 DNA helicase IV -
  NL733_RS13905 (NL733_13905) - 2837350..2837796 (+) 447 WP_023243628.1 YccF domain-containing protein -
  NL733_RS13910 (NL733_13910) yccS 2837815..2839968 (+) 2154 WP_000950876.1 YccS family putative transporter -
  NL733_RS13915 (NL733_13915) sxy/tfoX 2839955..2840560 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  NL733_RS13920 (NL733_13920) sulA 2840777..2841286 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  NL733_RS13925 (NL733_13925) ompA 2841643..2842695 (+) 1053 WP_254520833.1 porin OmpA -
  NL733_RS13930 (NL733_13930) matP 2842767..2843219 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  NL733_RS13935 (NL733_13935) - 2843405..2845165 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=706408 NL733_RS13915 WP_001202375.1 2839955..2840560(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Blockley strain R18.0186]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=706408 NL733_RS13915 WP_001202375.1 2839955..2840560(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Blockley strain R18.0186]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751