Detailed information NTG0706405

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PG908_RS06470
• Genome accession: NZ_CP115957
• Coordinates: 1333063..1334196 (+)
• Length: 377 a.a.
• NCBI ID: WP_011001157.1
• Uniprot ID: Q8Y037
• Organism: Ralstonia pseudosolanacearum strain PSS4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1328063..1339196

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PG908_RS06445	-	1328139..1329245 (+)	1107	WP_019718025.1	alkene reductase	-
PG908_RS06450	-	1329323..1330297 (-)	975	WP_011001153.1	NADPH:quinone oxidoreductase family protein	-
PG908_RS06455	surE	1330489..1331244 (+)	756	WP_011001154.1	5'/3'-nucleotidase SurE	-
PG908_RS06460	-	1331260..1332225 (+)	966	WP_011001155.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PG908_RS06465	-	1332227..1333054 (+)	828	WP_016725833.1	peptidoglycan DD-metalloendopeptidase family protein	-
PG908_RS06470	rpoS	1333063..1334196 (+)	1134	WP_011001157.1	RNA polymerase sigma factor RpoS	Regulator
PG908_RS06475	-	1334230..1335099 (-)	870	WP_011001158.1	endonuclease/exonuclease/phosphatase family protein	-
PG908_RS06480	rlmD	1335254..1336606 (+)	1353	WP_011001159.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
PG908_RS06485	-	1336691..1337392 (-)	702	WP_011001160.1	Bax inhibitor-1/YccA family protein	-
PG908_RS06490	ndk	1337761..1338186 (+)	426	WP_011001161.1	nucleoside-diphosphate kinase	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41830.76 Da
• Isoelectric Point: 4.6833

>NTDB_id=706405 PG908_RS06470 WP_011001157.1 1333063..1334196(+) (rpoS) [Ralstonia pseudosolanacearum strain PSS4]
MPRQKAATSANPADETIGAVDGPNAPNGRSGRRARGAAPAASDDVEVVDPLIDEAPAAEPADIADTSDANDSADESDEED
EDGEEAAPEEDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVSIAKGYLNRG
VPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGIDGR
DASIEDIAHLLGKTTEEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHR
YVVERRFGLNHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL

Nucleotide

• Length: 1134 bp

>NTDB_id=706405 PG908_RS06470 WP_011001157.1 1333063..1334196(+) (rpoS) [Ralstonia pseudosolanacearum strain PSS4]
ATGCCGCGCCAGAAAGCCGCCACGTCCGCCAACCCCGCCGATGAGACCATCGGCGCCGTCGATGGCCCGAACGCCCCGAA
CGGGCGTAGCGGGCGGCGTGCGCGCGGCGCAGCGCCGGCAGCCTCCGATGACGTCGAAGTCGTCGATCCCCTGATCGATG
AGGCGCCTGCCGCCGAGCCCGCCGACATCGCCGATACCTCGGACGCCAACGACAGCGCCGACGAATCCGACGAAGAGGAC
GAGGACGGCGAGGAGGCTGCGCCTGAGGAAGACTTCCGCACGGTGTTGCAGGCCGAGCTGGCCGCTGACACCGTCCAGCA
TTACCTGAACCGCATCAGCATCAAGCCGCTGCTGACGCCGGCGGAGGAACTGCACTTCTCCACGCTGGCCAAGGCAGGCG
AGTTCGCCGCGCGGCAGGTGATGATCGAGCGCAATCTGCGCCTGGTGGTCAGTATCGCCAAGGGCTATCTGAACCGCGGC
GTGCCGCTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCACGCGATCGAGAAATTCGATCCGGAGCGCGGCTT
CCGTTTCTCCACGTATGCCACGTGGTGGATCCGCCAGAGCATCGAGCGGGCCATCATGAACCAGGCACGCACCGTCCGCC
TGCCGGTGCACGTGATCCGCGAGCTCAACCAGGTGCTGCGCGCCAAGCGCCATCTGGAAAAGAGCGGAATCGATGGCCGC
GACGCCAGCATCGAAGACATTGCGCACCTGCTCGGCAAGACCACCGAGGAGGTGCAGGACGTGCTTTCGCTCAACGAGCA
CACGACCTCGCTCGATACGCCGTTCGATCTGGATCCGGGCACTAGCCTGCTCGATTTCCTGTCGGACGAGCATGGCGCCT
CGCCAGACCAGGAAGTCGCGCACCGCGAGTTGTCGCAGCTGATGAAATCCTGGCTGGCACGGCTATCCGACAAGCACCGC
TACGTGGTGGAACGCCGGTTCGGCCTTAACCACATCGAGCCGGCCACCCTCGAAGAGCTGGCCGCCGAGATGGGCCTGAC
GCGCGAGCGTGTGCGTCAGATCCAGCAGGAAGCGCTGGTCAAGCTCAAGCGGCACTTCGCCTCGCAAGGCGTGCGCAAGG
ATGCGGTGCTGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (221-298)

• Sigma-70, region 4 (Sigma70_r4) (311-363)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (103-136)

• Sigma-70 region 2 (Sigma70_r2) (141-210)

3D structure

• AlphaFold DB: Q8Y037

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	50.903	73.475	0.374