Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   H7677_RS03400 Genome accession   NZ_AP023391
Coordinates   683261..685474 (+) Length   737 a.a.
NCBI ID   WP_184494126.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 678261..690474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS03395 (DAT299_06200) cls 681558..683105 (+) 1548 WP_184494124.1 cardiolipin synthase -
  H7677_RS03400 (DAT299_06210) recJ 683261..685474 (+) 2214 WP_184494126.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  H7677_RS03405 (DAT299_06220) - 685453..686622 (+) 1170 WP_184494128.1 DUF3114 domain-containing protein -
  H7677_RS03410 (DAT299_06230) - 686637..687149 (+) 513 WP_002937136.1 adenine phosphoribosyltransferase -
  H7677_RS03415 (DAT299_06240) metA 687253..688194 (+) 942 WP_002941370.1 homoserine O-acetyltransferase MetA -
  H7677_RS03420 (DAT299_06250) - 688204..688878 (+) 675 WP_172060043.1 DnaD domain-containing protein -
  H7677_RS03425 (DAT299_06260) - 688880..689563 (+) 684 WP_015646660.1 tRNA (adenine(22)-N(1))-methyltransferase -
  H7677_RS03430 (DAT299_06270) - 689553..690347 (+) 795 WP_184494130.1 Nif3-like dinuclear metal center hexameric protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82602.39 Da        Isoelectric Point: 4.5293

>NTDB_id=70640 H7677_RS03400 WP_184494126.1 683261..685474(+) (recJ) [Streptococcus suis strain DAT299]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLHNPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVYADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKN
VERKDVVQAIYDEAKTMLRRDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIRDFQVESARTMGQNNAHLKLRITKGAAGFDVVAFGKGNLALEFSQVKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPAAGNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIAKPYYLDGYGSREQFAK
LYKTIYQFDEFDVRYKLKDLAVYLKIKDSLLVKMIQIFQELEFVTITDGVMRVNKGAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=70640 H7677_RS03400 WP_184494126.1 683261..685474(+) (recJ) [Streptococcus suis strain DAT299]
GTGATAAAACCCAATTATGACTGGCAATTATTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTAGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGACCTTCACAATCCCTATTTACTACATGATATGGACAAGGCGGTGGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGACGCAGACGGCATGACCTCGGCATCTATTCTGAAAGAAACTTTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCAAACCGTTTCACAGATGGTTATGGGCCGAATCAGTCAGTTTACAAGTATT
TTATCGAGCAGCAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCAGAGGGAAATTATCCTTTCAAACATTTGGCGGGCTGCGGTGTAGCCTTCAAATTGGCCTGTGCTCTTCTTG
AAACTGTTTATGCAGACTTGCTGGATTTGGTCGCAATTGGTACCATCGCTGATATGGTTAGCTTGACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTCTCGCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTCGATGATC
CTAATCCAGCCATTGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATCAAATTGCCCTCATGATTGACAGTAAAAAT
GTAGAACGCAAAGACGTCGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTCCGTCGGGATAGACCGGTTCAAGTTCT
GGCTAAAGAAGGTTGGAACCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAATTGCAGCAACCTGTTATCG
TATTGTCTATTGAAGATGGTAAGGCAAAGGGCTCGGCTCGTTCTGTTGAAGCAGTTGACATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTATTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCTAACCTTGACAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTTTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTATGGCATGGATAATAAAAAGCCT
GTATTCTACATCAGAGACTTTCAGGTGGAATCAGCAAGAACCATGGGGCAGAATAATGCCCATTTGAAACTACGCATTAC
TAAAGGTGCTGCTGGATTTGATGTCGTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGTCAAGGGCTTAG
AACTAGCTGTCACCTTGTCTGTCAATCAATGGAATGGCAATACCAGTCTTCAGCTCATGTTGGTTGATGCTCGGGTCAAC
GGTGTTCAACTTTATAATATTCGTGGAAAGCAACATCCTATTCCTGCAGGAGTCCCAATTTTGGACATTGAAAATCCAGC
AGCAGGTAACAAAGCAATTGTCTTGGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGTAGCTATTTTCAGGAAAGAGAAT
TTGAAGCCATTTATTTTAAAAATGAAATTGCCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTTGCTAAA
TTGTATAAGACTATTTACCAATTTGATGAGTTTGATGTTCGCTATAAACTGAAAGATTTGGCTGTTTACTTAAAAATTAA
GGACAGTCTATTGGTTAAAATGATTCAGATTTTCCAAGAATTAGAATTTGTCACGATTACGGATGGGGTCATGCGGGTCA
ACAAAGGGGCACAGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)

DHHA1 domain (DHHA1)

(317-432)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.554

99.864

0.725
  recJ Bacillus subtilis subsp. subtilis str. 168

37.968

100

0.385

Multiple sequence alignment