Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PG907_RS13355 Genome accession   NZ_CP115955
Coordinates   2841042..2841662 (+) Length   206 a.a.
NCBI ID   WP_193027737.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN2340     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2836042..2846662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG907_RS13345 sodB 2837279..2837857 (-) 579 WP_020747704.1 superoxide dismutase [Fe] -
  PG907_RS13350 xseA 2838003..2839418 (-) 1416 WP_197365328.1 exodeoxyribonuclease VII large subunit -
  PG907_RS13355 exbB 2841042..2841662 (+) 621 WP_193027737.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PG907_RS13360 - 2841685..2842116 (+) 432 WP_020747701.1 ExbD/TolR family protein -
  PG907_RS13365 lpxK 2842132..2843181 (+) 1050 WP_193027735.1 tetraacyldisaccharide 4'-kinase -
  PG907_RS13370 - 2843242..2843430 (+) 189 WP_003266270.1 Trm112 family protein -
  PG907_RS13375 kdsB 2843450..2844256 (+) 807 WP_193027734.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PG907_RS13380 adk 2844576..2845244 (+) 669 WP_193027733.1 adenylate kinase -
  PG907_RS13385 - 2845402..2846160 (+) 759 WP_193027732.1 3-hydroxyacyl-CoA dehydrogenase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22302.18 Da        Isoelectric Point: 9.3208

>NTDB_id=706358 PG907_RS13355 WP_193027737.1 2841042..2841662(+) (exbB) [Ralstonia pseudosolanacearum strain RUN2340]
MFSIIQAAGWPIWPLLIASVLALALIIERFVALQRKKIIPPKVYDEALAVAHQRKATPEVVNTLEQGSPLGRVLAAALRH
VVLHPATTREAAKEVVEEAGQNVTHRLERYLNALGTIASVAPLMGLFGTVIGMIEIFGSQTAAGTNPQALAHGISVALYN
TALGLVVAIPTLIFWRYFRGVVDSYVVELEHLSATYLDAILPPRRG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=706358 PG907_RS13355 WP_193027737.1 2841042..2841662(+) (exbB) [Ralstonia pseudosolanacearum strain RUN2340]
GTGTTTTCCATCATCCAAGCCGCCGGCTGGCCGATCTGGCCGCTGCTGATTGCCTCGGTGCTCGCCCTGGCGCTCATCAT
CGAACGCTTCGTCGCCTTGCAGCGCAAGAAGATCATTCCTCCCAAGGTGTATGACGAGGCTCTGGCCGTGGCACACCAGC
GCAAGGCGACGCCGGAAGTCGTGAACACGCTGGAACAGGGCTCGCCGCTGGGCCGCGTGCTGGCCGCCGCACTGCGCCAC
GTGGTGCTGCATCCGGCCACCACGCGCGAAGCCGCCAAGGAAGTGGTGGAAGAAGCCGGCCAGAACGTCACCCACCGCCT
GGAGCGCTACCTGAACGCACTCGGCACCATCGCCTCGGTGGCGCCGCTGATGGGCCTGTTCGGCACCGTGATCGGCATGA
TCGAGATCTTCGGCAGCCAGACCGCCGCCGGCACCAACCCGCAGGCGCTCGCGCACGGCATCTCGGTCGCGCTGTACAAC
ACGGCGCTGGGCCTGGTGGTGGCCATCCCGACACTGATCTTCTGGCGCTACTTCCGTGGCGTGGTCGACAGCTACGTGGT
CGAGCTCGAGCACCTGTCCGCCACGTACCTCGACGCGATCCTGCCGCCGCGGCGCGGCTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

40.488

99.515

0.403