Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PG907_RS11140 Genome accession   NZ_CP115955
Coordinates   2375511..2376554 (+) Length   347 a.a.
NCBI ID   WP_193026100.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN2340     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2370511..2381554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG907_RS11120 iscR 2370899..2371480 (-) 582 WP_011000970.1 Fe-S cluster assembly transcriptional regulator IscR -
  PG907_RS11125 - 2371889..2372848 (+) 960 WP_193026097.1 sugar ABC transporter substrate-binding protein -
  PG907_RS11130 - 2372884..2374455 (+) 1572 WP_275760240.1 sugar ABC transporter ATP-binding protein -
  PG907_RS11135 - 2374445..2375491 (+) 1047 WP_275760241.1 ABC transporter permease -
  PG907_RS11140 cytR 2375511..2376554 (+) 1044 WP_193026100.1 LacI family DNA-binding transcriptional regulator Regulator
  PG907_RS11145 rbsK 2376591..2377538 (+) 948 WP_193026101.1 ribokinase -
  PG907_RS11150 - 2377564..2379648 (-) 2085 WP_193034879.1 site-specific recombinase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37357.48 Da        Isoelectric Point: 7.1067

>NTDB_id=706352 PG907_RS11140 WP_193026100.1 2375511..2376554(+) (cytR) [Ralstonia pseudosolanacearum strain RUN2340]
MATIKDVAALAGVSFTTVSHVINNTRPVNSETRKRVEEAIRATRYVPSAVARSLKHRTTRTIGVLVPTATNPYFAELARG
IEDVCAAAGYSVILCNSDDDPRKQRDYLRVLMEKRVDGLIVSSAGPDNALLDALGESALPIVMVDRPTEGILADQVQIDH
EEGAYLATRHLLELGHRRIACISGPSALSVTAGRLAGFHRALREAGVPEHAARVAEGDFTSPGGYRAARELLTTGERPTA
IFASNDLMGIGALRAAAELGITVPKELSIIGFDDIELSRYVYPALSTVGQSIRQLGETTASTLLEHLTDHAARHHHEIPD
APRRIVLPPRLSLRESTAEPARPARAA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=706352 PG907_RS11140 WP_193026100.1 2375511..2376554(+) (cytR) [Ralstonia pseudosolanacearum strain RUN2340]
ATGGCCACCATCAAGGACGTTGCCGCATTAGCCGGGGTGTCATTCACCACCGTCTCGCATGTCATCAACAACACACGGCC
GGTCAACTCGGAAACGCGCAAGCGCGTGGAAGAGGCCATCCGCGCCACACGCTATGTGCCCAGCGCCGTGGCGCGCTCGC
TCAAACACCGCACCACGCGCACCATCGGCGTGCTGGTGCCGACCGCCACCAACCCCTACTTCGCCGAACTCGCGCGCGGC
ATCGAAGACGTGTGCGCCGCGGCCGGCTACAGCGTCATCCTGTGCAACTCCGACGACGATCCCCGCAAGCAGCGCGACTA
CCTGCGCGTGCTGATGGAGAAGCGCGTCGACGGCCTCATCGTCAGCAGCGCCGGACCGGACAACGCGCTGCTCGATGCGC
TGGGCGAATCCGCACTGCCCATCGTGATGGTGGACCGCCCCACCGAGGGCATCCTGGCCGACCAGGTGCAGATCGACCAC
GAGGAAGGCGCTTACCTGGCGACCCGGCATCTGCTCGAGCTCGGGCACCGCCGCATTGCCTGCATCAGCGGACCCTCGGC
GCTGAGCGTGACCGCCGGGCGGCTGGCGGGCTTTCACCGGGCGCTGCGCGAAGCCGGCGTGCCCGAGCACGCTGCGCGCG
TGGCCGAAGGCGACTTCACCAGCCCCGGCGGCTACCGCGCCGCGCGCGAGCTGCTGACCACCGGCGAGAGGCCCACCGCC
ATCTTCGCCAGCAACGACCTGATGGGCATCGGCGCGCTGCGTGCGGCCGCCGAGCTGGGCATCACGGTGCCGAAGGAACT
GTCCATCATCGGCTTCGACGACATCGAGCTGAGCCGCTACGTCTATCCGGCGCTGTCCACGGTGGGCCAGTCGATCCGGC
AGTTGGGCGAGACCACGGCCTCGACCCTGCTCGAGCACCTGACCGACCACGCCGCGCGGCATCATCACGAGATCCCCGAC
GCGCCGCGCCGTATCGTGCTGCCGCCGCGCCTGTCGCTGCGCGAGTCGACCGCCGAGCCCGCACGCCCCGCGCGCGCGGC
CTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-337)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.012

98.559

0.375