Detailed information NTG0706347

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PG907_RS09830
• Genome accession: NZ_CP115955
• Coordinates: 2112864..2113994 (-)
• Length: 376 a.a.
• NCBI ID: WP_193025915.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RUN2340
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2107864..2118994

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PG907_RS09810	ndk	2108876..2109301 (-)	426	WP_020749022.1	nucleoside-diphosphate kinase	-
PG907_RS09815	-	2109669..2110370 (+)	702	WP_193034750.1	Bax inhibitor-1/YccA family protein	-
PG907_RS09820	rlmD	2110454..2111806 (-)	1353	WP_193028509.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
PG907_RS09825	-	2111961..2112830 (+)	870	WP_193025914.1	endonuclease/exonuclease/phosphatase family protein	-
PG907_RS09830	rpoS	2112864..2113994 (-)	1131	WP_193025915.1	RNA polymerase sigma factor RpoS	Regulator
PG907_RS09835	-	2114003..2114830 (-)	828	WP_193025916.1	peptidoglycan DD-metalloendopeptidase family protein	-
PG907_RS09840	-	2114832..2115797 (-)	966	WP_193025917.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PG907_RS09845	surE	2115813..2116568 (-)	756	WP_011001154.1	5'/3'-nucleotidase SurE	-
PG907_RS09850	-	2116762..2117736 (+)	975	WP_193025919.1	NADPH:quinone oxidoreductase family protein	-
PG907_RS09855	-	2117814..2118920 (-)	1107	WP_193025920.1	alkene reductase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41900.90 Da
• Isoelectric Point: 4.7304

>NTDB_id=706347 PG907_RS09830 WP_193025915.1 2112864..2113994(-) (rpoS) [Ralstonia pseudosolanacearum strain RUN2340]
MPRQKAATSANPADETIGAVDGPNTPNGRSGRRARAAAPAASEDIEVVDPLVDEVPAAERADVADTSDANDSADEEDEDE
EGEEAAPEEDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFPARQVMIERNLRLVVSIAKGYLNRGV
PLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGIDGRD
ASIEDIAHLLGKTTDEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHRY
VVERRFGLNHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL

Nucleotide

• Length: 1131 bp

>NTDB_id=706347 PG907_RS09830 WP_193025915.1 2112864..2113994(-) (rpoS) [Ralstonia pseudosolanacearum strain RUN2340]
ATGCCGCGCCAGAAAGCCGCCACGTCCGCCAATCCCGCCGATGAGACCATCGGCGCCGTCGATGGCCCGAACACCCCAAA
CGGGCGTAGCGGGCGGCGTGCGCGCGCCGCAGCGCCGGCAGCCTCCGAGGACATCGAAGTCGTCGATCCCCTGGTCGATG
AGGTGCCCGCCGCCGAGCGCGCCGACGTCGCCGATACCTCGGACGCCAACGACAGCGCCGACGAAGAGGACGAGGACGAG
GAGGGCGAGGAAGCCGCGCCTGAGGAAGACTTCCGCACGGTGTTGCAGGCCGAGCTGGCCGCCGACACCGTCCAGCACTA
CCTGAACCGCATCAGCATCAAGCCGCTGCTGACGCCGGCGGAGGAGCTGCACTTCTCCACGCTGGCCAAGGCAGGCGAGT
TCCCCGCGCGGCAGGTGATGATCGAGCGCAACCTGCGCCTGGTGGTCAGTATCGCCAAGGGCTATCTGAACCGCGGCGTG
CCCTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCACGCGATCGAGAAATTCGATCCGGAGCGCGGCTTCCG
TTTCTCCACGTATGCCACGTGGTGGATCCGCCAGAGCATCGAGCGGGCCATCATGAACCAGGCGCGCACCGTCCGCCTGC
CGGTGCACGTGATCCGCGAGCTCAACCAGGTGTTGCGCGCCAAGCGCCATCTGGAAAAGAGCGGCATCGATGGCCGCGAC
GCCAGCATCGAAGACATTGCGCACCTGCTCGGCAAGACCACCGATGAGGTGCAGGACGTGCTCTCGCTCAACGAGCATAC
CACCTCGCTCGATACGCCGTTCGACCTGGATCCGGGCACCAGCCTGCTCGATTTCCTGTCGGACGAGCATGGGGCCTCGC
CGGACCAGGAAGTCGCGCACCGCGAGTTGTCGCAGTTGATGAAATCCTGGCTGGCACGGCTGTCCGACAAGCACCGCTAC
GTGGTGGAGCGCCGGTTCGGCCTCAACCACATCGAACCGGCCACCCTCGAAGAACTGGCCGCGGAGATGGGCCTGACGCG
CGAGCGTGTGCGTCAGATCCAGCAGGAAGCGCTGGTCAAGCTCAAGCGGCACTTCGCCTCGCAAGGCGTGCGCAAGGATG
CGGTGCTGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (140-209)

• Sigma-70, region 4 (Sigma70_r4) (310-362)

• Sigma-70 region 3 (Sigma70_r3) (220-297)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (102-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	48.387	82.447	0.399