Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PG907_RS03495 Genome accession   NZ_CP115955
Coordinates   734710..735078 (+) Length   122 a.a.
NCBI ID   WP_003261832.1    Uniprot ID   A0ABF7RF33
Organism   Ralstonia pseudosolanacearum strain RUN2340     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 729710..740078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG907_RS03465 - 730235..731113 (-) 879 WP_193035040.1 TPM domain-containing protein -
  PG907_RS03470 - 731126..731752 (-) 627 WP_193035038.1 LemA family protein -
  PG907_RS03475 - 731862..732113 (+) 252 Protein_694 dihydrodipicolinate synthase family protein -
  PG907_RS03480 hemL 732215..733507 (-) 1293 WP_193036790.1 glutamate-1-semialdehyde 2,1-aminomutase -
  PG907_RS03485 - 733728..733910 (+) 183 WP_003261842.1 rubredoxin -
  PG907_RS03490 pilG 734211..734678 (+) 468 WP_016723446.1 response regulator Regulator
  PG907_RS03495 pilH 734710..735078 (+) 369 WP_003261832.1 response regulator Machinery gene
  PG907_RS03500 - 735137..735682 (+) 546 WP_193026389.1 chemotaxis protein CheW -
  PG907_RS03505 - 735931..738162 (+) 2232 WP_193026388.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13468.71 Da        Isoelectric Point: 4.9222

>NTDB_id=706333 PG907_RS03495 WP_003261832.1 734710..735078(+) (pilH) [Ralstonia pseudosolanacearum strain RUN2340]
MAIKKILVVDDSPTEALFLSEILSKNGFKVSVAADSDQAMAKLEGEPFDLVLMDVVMPGQNGYQATRAIKKDDRFKDIPV
IICTTKGLETDRVWGMRQGASDYIVKPVKAEDLLEKIAKLPQ

Nucleotide


Download         Length: 369 bp        

>NTDB_id=706333 PG907_RS03495 WP_003261832.1 734710..735078(+) (pilH) [Ralstonia pseudosolanacearum strain RUN2340]
ATGGCAATCAAAAAGATTCTGGTGGTTGATGACTCCCCCACCGAAGCACTGTTCCTGTCGGAAATCCTGAGCAAGAACGG
TTTCAAGGTGTCGGTCGCGGCCGACAGCGACCAGGCCATGGCCAAGCTGGAAGGCGAGCCTTTCGACCTGGTCCTGATGG
ACGTGGTGATGCCCGGCCAGAACGGCTACCAGGCCACCCGCGCGATCAAGAAGGACGATCGCTTTAAGGACATCCCGGTG
ATCATCTGCACCACCAAGGGCCTGGAGACCGACCGCGTGTGGGGCATGCGCCAGGGCGCGTCGGACTACATCGTCAAGCC
GGTCAAGGCAGAAGATCTGCTCGAAAAGATCGCCAAGCTGCCGCAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABF7RF33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

44.068

96.721

0.426