Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   G6L41_RS12560 Genome accession   NZ_CP115924
Coordinates   2578321..2580129 (+) Length   602 a.a.
NCBI ID   WP_173992230.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain K224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2573321..2585129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L41_RS12560 (G6L41_012560) recQ 2578321..2580129 (+) 1809 WP_173992230.1 DNA helicase RecQ Machinery gene
  G6L41_RS12565 (G6L41_012565) - 2580184..2581416 (-) 1233 WP_065661530.1 ROK family transcriptional regulator -
  G6L41_RS12570 (G6L41_012570) - 2581683..2582705 (+) 1023 WP_003514241.1 sugar ABC transporter substrate-binding protein -
  G6L41_RS12575 (G6L41_012575) - 2582929..2584011 (+) 1083 WP_038489298.1 ABC transporter permease -
  G6L41_RS12580 (G6L41_012580) - 2584011..2584793 (+) 783 WP_173992231.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 66880.50 Da        Isoelectric Point: 6.3321

>NTDB_id=706315 G6L41_RS12560 WP_173992230.1 2578321..2580129(+) (recQ) [Agrobacterium tumefaciens strain K224]
MTTDPLQILKTVYGYDTFRGQQAEIIRHVMAGNNAFVLMPTGGGKSLCYQIPALAGQGMGLVVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEQRRILWQDMRAGKVDILYAAPETLLKPDVLDALQPISLSLIAIDEAHCLSQWGHDFRPPYRQLDTL
IERFPETPRMALTATADEPTRAEILGHLGINGSDAFIAGFDRPNIRYAIMEKDNPRTQLKRFLTGREDESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREANQTHFQHGEAVIMVATVAFGMGIDKPDVRFVVHIDLPSSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAGDQRKNMERRKLDALLGLAETAGCRRRVLLSYFGDYCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGMEDERISSFGHDRITTYGIGKEHDNRTWRAILRQMVALRLIEVDLAG
HGGLSISEEGRRFLREKPSLMLRIPSAPRSARQQTNRKPTAIVLPDADRSLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELAAARPASVGEMAQIPGVGDSKLERYGPAFLAAITEHAASE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=706315 G6L41_RS12560 WP_173992230.1 2578321..2580129(+) (recQ) [Agrobacterium tumefaciens strain K224]
GTGACCACCGATCCCTTGCAGATTCTCAAGACCGTCTATGGCTACGATACGTTTCGTGGACAGCAGGCCGAAATCATCCG
GCATGTGATGGCAGGCAACAATGCATTTGTATTGATGCCAACAGGGGGCGGGAAGTCGCTTTGTTACCAGATTCCGGCGC
TCGCCGGCCAGGGAATGGGGCTGGTTGTTTCGCCCCTGATCGCGCTGATGGTCGATCAGGTCGCCGCCTTGCGTCAGGCA
GGTGTGCGGGCAGAAGCTCTCAACTCCGATCTTTCCCCAGAACAGCGGCGGATACTCTGGCAGGATATGCGGGCTGGCAA
GGTCGATATTCTCTATGCCGCGCCGGAGACCCTTCTCAAGCCGGATGTTCTGGATGCGCTTCAACCTATCAGCCTGTCGC
TGATCGCGATCGACGAAGCTCATTGTCTATCGCAGTGGGGGCACGATTTCCGCCCCCCGTACCGCCAGCTAGACACGTTG
ATCGAGCGCTTTCCGGAGACGCCACGCATGGCGCTCACGGCGACTGCGGACGAGCCAACCCGCGCCGAAATTCTGGGTCA
TCTCGGGATAAACGGAAGCGACGCCTTCATAGCCGGATTCGATCGGCCAAATATCCGCTATGCGATCATGGAAAAGGATA
ATCCACGTACGCAGCTGAAGCGCTTCCTGACGGGTCGCGAGGACGAAAGCGGCATCGTCTATTGCCTTTCCAAACGGAAG
GTCGATGAGACGGCAGCCTGGCTGCGCGAGGAGGGGCGCGATGCGCTGCCCTATCACGCCGGCATGGACAAGGCCGCCCG
CGAGGCGAACCAGACCCACTTCCAGCATGGTGAAGCTGTCATCATGGTTGCAACCGTGGCTTTCGGCATGGGCATCGACA
AACCGGATGTGCGCTTCGTCGTGCATATCGATCTGCCCAGCAGCATCGAAGCCTATTATCAGGAAACCGGCCGTGCCGGC
CGTGATGGTCTGCCGTCCGACGTGCTTATGCTTTACGGTTATGAAGACATCGCATTGCGCAACCGCTTTATCGAAGAGTC
GGATGCGGGCGACCAGCGCAAAAACATGGAGCGCCGGAAGCTCGATGCGTTGCTTGGCCTCGCGGAAACCGCCGGTTGCC
GTCGGCGGGTGCTTTTGTCTTATTTCGGCGACTATTGCGAGCCCTGCGGCAATTGCGACACCTGTGCGGAACCGCCGGAC
CTGTTTGATGGTGCCATTGCCGCGCAGAAGTTGCTGTCCTGCATTTACCGCACGGGAGAACGTTTCGGCCAGGCCTATGT
CATCCGCGTATTGCTGGGCATGGAAGATGAACGGATATCGAGCTTTGGTCACGATCGGATCACGACCTACGGCATCGGCA
AAGAGCACGACAATCGCACCTGGCGGGCCATCCTGCGCCAGATGGTTGCGCTGCGCCTGATCGAGGTTGATCTGGCCGGT
CACGGGGGATTGTCCATTTCCGAAGAAGGGAGGCGGTTCCTGCGCGAAAAGCCGTCCCTGATGTTGAGGATACCGTCCGC
TCCCCGTTCGGCGCGACAACAGACTAATCGCAAGCCCACCGCCATTGTTTTACCGGATGCCGATCGCAGTCTCTTTGAGG
CGCTGCGTGCGAAGCGCATGGAAATTGCCCGCGCACAGAACGTTCCGCCCTATGTGATTTTTCACGACAAGACACTCATT
GAGCTTGCGGCAGCAAGACCGGCGTCTGTGGGAGAAATGGCGCAGATACCCGGAGTGGGAGACTCAAAGCTGGAACGATA
CGGCCCTGCTTTTCTGGCAGCGATCACGGAACATGCCGCCAGCGAGTGA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

RQC domain (RQC)

(398-509)

Helicase conserved C-terminal domain (Helicase_C)

(220-322)

HRDC domain (HRDC)

(530-595)

DEAD/DEAH box helicase (DEAD)

(22-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.752

99.003

0.374