Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   G6L41_RS05050 Genome accession   NZ_CP115924
Coordinates   1023591..1024313 (-) Length   240 a.a.
NCBI ID   WP_003512859.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain K224     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1018591..1029313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L41_RS05040 (G6L41_005040) - 1020016..1022451 (+) 2436 WP_173992550.1 ComEC/Rec2 family competence protein -
  G6L41_RS05045 (G6L41_005045) - 1022468..1023151 (-) 684 WP_025593350.1 glutathione S-transferase family protein -
  G6L41_RS05050 (G6L41_005050) dinR/lexA 1023591..1024313 (-) 723 WP_003512859.1 transcriptional repressor LexA Regulator
  G6L41_RS05055 (G6L41_005055) - 1024525..1025406 (+) 882 WP_013636026.1 VOC family protein -
  G6L41_RS05060 (G6L41_005060) kdsA 1025406..1026251 (+) 846 WP_013636027.1 3-deoxy-8-phosphooctulonate synthase -
  G6L41_RS05065 (G6L41_005065) eno 1026399..1027673 (+) 1275 WP_003512870.1 phosphopyruvate hydratase -
  G6L41_RS05070 (G6L41_005070) - 1028010..1028327 (+) 318 WP_173992551.1 FtsB family cell division protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25998.93 Da        Isoelectric Point: 9.3311

>NTDB_id=706296 G6L41_RS05050 WP_003512859.1 1023591..1024313(-) (dinR/lexA) [Agrobacterium tumefaciens strain K224]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQ
RGFSPSVIEGSLGKPKTPEPAPAPKTPANDLGGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGTGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=706296 G6L41_RS05050 WP_003512859.1 1023591..1024313(-) (dinR/lexA) [Agrobacterium tumefaciens strain K224]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAACGAATGAAAGAGTCCGGCGTGCCGCCCTCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCTTCGAAATCCGGCATCCACCGCCTGATAACCGCTCTCGAAGAGCGCGGGTTCA
TTCGTCGGCTACCGAATAGAGCTCGGGCGCTGGAAGTCATCAAGCTGCCCGAGGCTTATACGCCGGGCGCAAGGCCGCAG
CGCGGCTTTTCGCCGAGCGTTATCGAAGGCAGCCTTGGCAAGCCCAAGACGCCGGAACCGGCCCCTGCCCCCAAGACGCC
GGCCAATGATCTGGGCGGGGCTGTCACCGTGCCGGTCATGGGCCGCATCGCTGCGGGCGTGCCGATTTCCGCCATCCAGA
ACAACACCCATGATGTGGCCGTGCCAGTAGACATGCTTGGCACGGGCGAACATTACGCGCTTGAGGTCAAGGGTGATTCG
ATGATCGAGGCCGGCATTTTCGACGGCGACACAGTCATCATCCGCAACGGCAACACTGCCAATCCCGGGGACATCGTTGT
GGCTCTGGTGGATGACGAGGAAGCCACGCTGAAGCGCTTCCGCCGCAAGGGTGCCTCCATTGCGCTCGAGGCGGCAAACC
CAGCCTATGAGACCCGTATCTTCGGGCCCGACCGGGTGAAAATTCAGGGCAAGCTGGTTGGGCTGATCCGCCGCTACCAT
TGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(118-233)

LexA DNA binding domain (LexA_DNA_bind)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363