Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FGU70_RS13900 Genome accession   NZ_CP100689
Coordinates   2837786..2838391 (-) Length   201 a.a.
NCBI ID   WP_001202376.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Newport strain R18.0287     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2832786..2843391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGU70_RS13885 (FGU70_13885) helD 2833003..2835057 (-) 2055 WP_000420518.1 DNA helicase IV -
  FGU70_RS13890 (FGU70_13890) - 2835181..2835627 (+) 447 WP_001261222.1 YccF domain-containing protein -
  FGU70_RS13895 (FGU70_13895) yccS 2835646..2837799 (+) 2154 WP_000950876.1 YccS family putative transporter -
  FGU70_RS13900 (FGU70_13900) sxy/tfoX 2837786..2838391 (-) 606 WP_001202376.1 TfoX/Sxy family DNA transformation protein Regulator
  FGU70_RS13905 (FGU70_13905) sulA 2838608..2839117 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  FGU70_RS13910 (FGU70_13910) ompA 2839474..2840526 (+) 1053 WP_001670727.1 porin OmpA -
  FGU70_RS13915 (FGU70_13915) matP 2840598..2841050 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  FGU70_RS13920 (FGU70_13920) - 2841236..2842996 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23134.92 Da        Isoelectric Point: 8.7387

>NTDB_id=706249 FGU70_RS13900 WP_001202376.1 2837786..2838391(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Newport strain R18.0287]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQPRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=706249 FGU70_RS13900 WP_001202376.1 2837786..2838391(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Newport strain R18.0287]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCCCAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751