Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OYT1_RS02865 Genome accession   NZ_AP018738
Coordinates   603673..604635 (-) Length   320 a.a.
NCBI ID   WP_062625428.1    Uniprot ID   A0A2Z6G9Y7
Organism   Ferriphaselus amnicola strain OYT1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 598673..609635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT1_RS02845 (OYT1_ch0588) - 600085..601182 (+) 1098 WP_145983659.1 glycoside hydrolase family 113 -
  OYT1_RS02850 (OYT1_ch0589) rpoH 601206..602066 (-) 861 WP_062625431.1 RNA polymerase sigma factor RpoH -
  OYT1_RS02855 (OYT1_ch0590) ftsX 602130..603026 (-) 897 WP_062625430.1 permease-like cell division protein FtsX -
  OYT1_RS02860 (OYT1_ch0591) ftsE 603023..603676 (-) 654 WP_062625429.1 cell division ATP-binding protein FtsE -
  OYT1_RS02865 (OYT1_ch0592) pilA 603673..604635 (-) 963 WP_062625428.1 signal recognition particle-docking protein FtsY Machinery gene
  OYT1_RS02870 (OYT1_ch0593) - 604731..606095 (+) 1365 WP_062625427.1 pitrilysin family protein -
  OYT1_RS02875 (OYT1_ch0594) - 606085..607401 (+) 1317 WP_062625426.1 pitrilysin family protein -
  OYT1_RS02880 (OYT1_ch0595) rsmD 607440..607934 (+) 495 WP_062625425.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OYT1_RS02885 (OYT1_ch0596) coaD 607927..608403 (+) 477 WP_062625424.1 pantetheine-phosphate adenylyltransferase -
  OYT1_RS02890 (OYT1_ch0597) - 608414..608668 (+) 255 WP_062625423.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34256.46 Da        Isoelectric Point: 6.8469

>NTDB_id=70621 OYT1_RS02865 WP_062625428.1 603673..604635(-) (pilA) [Ferriphaselus amnicola strain OYT1]
MFGFLKKTPSNSTEKPVSTGWLGKLKRGLARTGNQLVDLFSGGGKIDDELYEELETILITSDVGMDATRHLLADLRREVK
EQRLTEASQMKEALAHCLLKLLKPLAQPLDTGTHQPFVIMLCGVNGAGKTTSIGKLAKHFQSQGKSVLLAAGDTFRAAAR
EQLMTWGERNNVTVIAQQSGDAAAVIYDAVQAAQARKIDVVLADTAGRLTTQAHLMEEIKKVKRVIDKALPGAPHEVLLV
LDANTGQNALSQTKAFDDALGVTGLVLTKLDGTAKGGVIAAIAKAHPIPVRFIGVGEGLDDLRPFVAEEFVSALLGFDEE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=70621 OYT1_RS02865 WP_062625428.1 603673..604635(-) (pilA) [Ferriphaselus amnicola strain OYT1]
ATGTTTGGCTTCCTGAAAAAAACCCCTTCCAACAGCACGGAAAAGCCCGTCAGCACTGGCTGGCTGGGCAAACTGAAACG
TGGATTGGCGCGTACCGGCAACCAGTTAGTCGATCTATTCAGTGGGGGCGGTAAGATTGATGACGAGCTGTACGAAGAGC
TGGAAACCATACTCATCACCAGCGACGTCGGCATGGATGCTACGCGCCATCTACTGGCCGATCTGCGCCGCGAAGTAAAA
GAACAACGACTGACCGAAGCCAGTCAGATGAAGGAAGCGCTGGCACATTGCCTATTGAAATTGCTCAAGCCGCTGGCTCA
GCCACTGGATACCGGCACACATCAGCCTTTCGTCATCATGCTGTGCGGCGTGAACGGCGCAGGCAAGACCACCTCCATCG
GCAAGCTGGCCAAGCATTTCCAATCTCAAGGCAAATCGGTACTACTGGCAGCAGGCGACACCTTCCGCGCCGCCGCACGC
GAACAACTAATGACCTGGGGCGAGCGCAACAACGTCACCGTTATCGCCCAGCAAAGTGGTGACGCCGCCGCCGTGATCTA
CGATGCCGTGCAAGCGGCCCAGGCGCGCAAAATCGATGTGGTACTTGCCGATACCGCCGGTCGTTTGACCACCCAAGCAC
ACCTGATGGAGGAGATCAAAAAGGTCAAACGCGTCATCGACAAAGCCCTGCCCGGCGCGCCGCACGAAGTGTTGCTGGTG
CTGGATGCCAACACCGGCCAGAACGCGCTGTCGCAGACCAAGGCTTTCGATGATGCGTTAGGCGTGACCGGGCTGGTACT
GACCAAGCTCGATGGCACGGCCAAGGGCGGCGTGATCGCCGCCATCGCTAAAGCTCACCCGATTCCCGTACGCTTCATCG
GCGTCGGCGAAGGACTAGACGATTTACGCCCCTTTGTGGCCGAAGAATTTGTTTCTGCTTTGCTGGGATTCGACGAAGAA
TGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(116-316)

SRP54-type protein, helical bundle domain (SRP54_N)

(34-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z6G9Y7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

65.667

93.75

0.616

Multiple sequence alignment