Detailed information NTG0070620

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: H7677_RS01040
• Genome accession: NZ_AP023391
• Coordinates: 191413..193902 (-)
• Length: 829 a.a.
• NCBI ID: WP_184493759.1
• Uniprot ID: -
• Organism: Streptococcus suis strain DAT299
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 186413..198902

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7677_RS01015 (DAT299_01660)	dinB	187028..188095 (+)	1068	WP_014637367.1	DNA polymerase IV	-
H7677_RS01020 (DAT299_01670)	-	188137..188556 (+)	420	WP_024408609.1	Rrf2 family transcriptional regulator	-
H7677_RS01025 (DAT299_01680)	-	188795..189421 (+)	627	WP_184493753.1	NAD(P)-dependent oxidoreductase	-
H7677_RS01030 (DAT299_01690)	-	189526..190446 (+)	921	WP_184493755.1	1-phosphofructokinase family hexose kinase	-
H7677_RS01035 (DAT299_01700)	-	190494..191132 (+)	639	WP_184493757.1	endonuclease III domain-containing protein	-
H7677_RS01040 (DAT299_01710)	recD/recD2/recDB	191413..193902 (-)	2490	WP_184493759.1	ATP-dependent RecD-like DNA helicase	Machinery gene
H7677_RS01045 (DAT299_01720)	lepB	193966..194595 (-)	630	WP_024413243.1	signal peptidase I	-
H7677_RS01050 (DAT299_01730)	rnhC	194605..195495 (-)	891	WP_184493761.1	ribonuclease HIII	-
H7677_RS01055 (DAT299_01740)	-	195580..196563 (+)	984	WP_184493763.1	Gfo/Idh/MocA family protein	-
H7677_RS01060 (DAT299_01750)	-	196912..198162 (+)	1251	WP_184493765.1	LysM peptidoglycan-binding domain-containing protein	-

Sequence

Protein

• Length: 829 a.a.
• Molecular weight: 93212.67 Da
• Isoelectric Point: 4.6766

>NTDB_id=70620 H7677_RS01040 WP_184493759.1 191413..193902(-) (recD/recD2/recDB) [Streptococcus suis strain DAT299]
MNEVYVTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSRKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLIEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEYGIHKNLTRLMGKNGFKPFPRADVEAA
IAELETMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEVQNEQIPALIKRIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLGEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTLRKTYLVPRFQGEMAEQDSKEALTEKAESKTAATTQTQHPTQPDRKEQVKVVKENNQQLSLLDQDQPEKTSTQPR
EYILTVDNLLTIDPMIGINQTDIEEFFKA

Nucleotide

• Length: 2490 bp

>NTDB_id=70620 H7677_RS01040 WP_184493759.1 191413..193902(-) (recD/recD2/recDB) [Streptococcus suis strain DAT299]
ATGAACGAAGTGTATGTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATTGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTGGTCAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGCAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGTCTATCCC
GTAAGAACATGCAGGCATTTGTAGAGAAACTCCGCCTCAATTATGGAACCGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGATCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAATCTAGGAATTGCCAGTGATT
CACCCCAACGTTTTCGGGCTGGCATGCTCTTTAGTCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGATCCCGCCGCTGTTGCCAAAGA
ATTGACGGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAT
ACGGTATCCATAAAAACCTGACCCGTCTGATGGGAAAAAATGGTTTCAAACCCTTCCCACGCGCAGACGTTGAGGCTGCT
ATAGCAGAGCTGGAAACTATGTCTTCCCTGACCTACGATGACATTCAAAAAGAAGCCATCGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGGACTGGAAAAACAACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTGACTCGCAATCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGGATG
AATGAATTGACAGGTCTGCCTTCCGCCACCATCCACCGCCATCTGGGGCTTGTTGAAGGACAGGAGGAATCCTACCGCGA
TGATTACTTGGATGCAGACTTTATCATCGTGGATGAGTTTTCTATGGTAGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCATCCCAAACCCAAGTTCTGATTGTCGGCGATGCGGAGCAATTACCTTCTGTCAGTCCCGGTCAAGTCCTTGCT
GACCTCTTGAAAATTGACAAGCTACCCAGCATCACTCTGGAACGTATCTATCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAGATTCGCCAAGGAGCTCTGCCTAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGTGC
AAAACGAACAAATTCCAGCCCTGATTAAGCGCATTGTCGGCGCAGCTATCAAGTCAGGAATTCCTGCAAACGAGGTACAG
ATCCTCGCTCCCATGTACCGTGGGGCCGCAGGCATCGACCAACTCAACACCATGACCCAGGCCCTGCTCAATCCACTGGG
AGAAGGAGAGCTAGAGTTCCTCCATAATGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATCCACCTAGTCAACGATGCCG
AGGCCAATGTCTTCAATGGTGATTTAGGCTACATCACCGACCTCCTACCAGCCAAGTACACCGACTCCAAGCAGGATGAA
ATCACCATCAACTTCGACGGCAGCGAGGTCACCTATCCTCGAAACGAATGGTACAAAATCACTCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGTAGCGAGTTCCAGGTCGTCATTCTTCCTATCACCCGCACCAGCCACCGCATGCTCCAGCGCA
ACTTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGCACCCTCCGAAAAACCTACCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGATAGCAAGGAAGC
TTTGACTGAAAAAGCCGAAAGCAAAACAGCGGCAACCACACAAACCCAGCACCCTACTCAGCCAGACAGAAAAGAACAGG
TTAAAGTAGTCAAAGAAAACAACCAACAACTGTCCCTTCTTGACCAAGACCAACCAGAAAAAACAAGTACCCAACCCAGA
GAATACATTTTGACTGTGGACAACCTGCTAACCATTGACCCCATGATCGGCATAAACCAGACAGATATTGAAGAATTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (663-710)

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

• AAA domain (AAA_30) (332-529)

• Helix-hairpin-helix domain (HHH_5) (97-145)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (575-645)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	41.316	91.677	0.379