Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PCM89_RS07630 Genome accession   NZ_CP115887
Coordinates   1598682..1600361 (-) Length   559 a.a.
NCBI ID   WP_000942213.1    Uniprot ID   -
Organism   Staphylococcus aureus strain C308     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1593682..1605361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCM89_RS07610 (PCM89_07610) - 1593832..1595106 (-) 1275 WP_000406858.1 dihydrolipoamide acetyltransferase family protein -
  PCM89_RS07615 (PCM89_07615) - 1595119..1596102 (-) 984 WP_001096642.1 alpha-ketoacid dehydrogenase subunit beta -
  PCM89_RS07620 (PCM89_07620) - 1596102..1597094 (-) 993 WP_000568349.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  PCM89_RS07625 (PCM89_07625) lpdA 1597110..1598531 (-) 1422 WP_001291532.1 dihydrolipoyl dehydrogenase -
  PCM89_RS07630 (PCM89_07630) recN 1598682..1600361 (-) 1680 WP_000942213.1 DNA repair protein RecN Machinery gene
  PCM89_RS07635 (PCM89_07635) ahrC 1600377..1600829 (-) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  PCM89_RS07640 (PCM89_07640) - 1601260..1602141 (-) 882 WP_000183376.1 polyprenyl synthetase family protein -
  PCM89_RS07645 (PCM89_07645) - 1602119..1602349 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  PCM89_RS07650 (PCM89_07650) xseA 1602342..1603679 (-) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  PCM89_RS07655 (PCM89_07655) nusB 1603696..1604085 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  PCM89_RS07660 (PCM89_07660) - 1604145..1604507 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64281.84 Da        Isoelectric Point: 4.7316

>NTDB_id=706169 PCM89_RS07630 WP_000942213.1 1598682..1600361(-) (recN) [Staphylococcus aureus strain C308]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELISYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=706169 PCM89_RS07630 WP_000942213.1 1598682..1600361(-) (recN) [Staphylococcus aureus strain C308]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTTAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTTCAATTAGAAGAATTGTCTGAAGCACACCTAAAAGAAGGTGAAATAGAGCAACTTG
AAATTGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCACTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCTCATATCAAGAAAAACTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGCTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCTGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44