Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PCM89_RS06925 Genome accession   NZ_CP115887
Coordinates   1479306..1479932 (+) Length   208 a.a.
NCBI ID   WP_001108885.1    Uniprot ID   Q2YY57
Organism   Staphylococcus aureus strain C308     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1474306..1484932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCM89_RS06895 (PCM89_06895) - 1475291..1475623 (-) 333 WP_000516801.1 DUF4889 domain-containing protein -
  PCM89_RS06900 (PCM89_06900) - 1475707..1476852 (-) 1146 WP_000487150.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  PCM89_RS06910 (PCM89_06910) gpsB 1477503..1477847 (-) 345 WP_001286320.1 cell division regulator GpsB -
  PCM89_RS06915 (PCM89_06915) - 1477861..1478424 (-) 564 WP_000241302.1 DUF1273 domain-containing protein -
  PCM89_RS06920 (PCM89_06920) - 1478417..1478767 (-) 351 WP_001000805.1 YppE family protein -
  PCM89_RS06925 (PCM89_06925) recU 1479306..1479932 (+) 627 WP_001108885.1 Holliday junction resolvase RecU Machinery gene
  PCM89_RS06930 (PCM89_06930) - 1479929..1482112 (+) 2184 WP_000138345.1 transglycosylase domain-containing protein -
  PCM89_RS06935 (PCM89_06935) - 1482630..1482971 (-) 342 WP_000182028.1 YpoC family protein -
  PCM89_RS06940 (PCM89_06940) nth 1482976..1483635 (-) 660 WP_000253765.1 endonuclease III -
  PCM89_RS06945 (PCM89_06945) - 1483625..1484311 (-) 687 WP_000362222.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24427.81 Da        Isoelectric Point: 9.7084

>NTDB_id=706166 PCM89_RS06925 WP_001108885.1 1479306..1479932(+) (recU) [Staphylococcus aureus strain C308]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=706166 PCM89_RS06925 WP_001108885.1 1479306..1479932(+) (recU) [Staphylococcus aureus strain C308]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCGGTACAAATAGTTAATGTCAACTATCCCAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGATCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YY57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529