Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PCM89_RS03600 Genome accession   NZ_CP115887
Coordinates   772306..773388 (+) Length   360 a.a.
NCBI ID   WP_001670292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain C308     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 767306..778388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCM89_RS03580 (PCM89_03580) gdpS 767684..768754 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  PCM89_RS03585 (PCM89_03585) - 769072..770127 (+) 1056 WP_000258149.1 glycosyltransferase family 4 protein -
  PCM89_RS03590 (PCM89_03590) - 770291..770932 (-) 642 WP_000192942.1 YigZ family protein -
  PCM89_RS03595 (PCM89_03595) fakB1 771076..771942 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  PCM89_RS03600 (PCM89_03600) comFA 772306..773388 (+) 1083 WP_001670292.1 DEAD/DEAH box helicase Machinery gene
  PCM89_RS03605 (PCM89_03605) - 773381..774055 (+) 675 WP_001057974.1 ComF family protein -
  PCM89_RS03610 (PCM89_03610) hpf 774116..774688 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PCM89_RS03615 (PCM89_03615) secA 775103..777634 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  PCM89_RS03620 (PCM89_03620) - 777676..777774 (+) 99 WP_031789464.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42010.51 Da        Isoelectric Point: 9.7563

>NTDB_id=706136 PCM89_RS03600 WP_001670292.1 772306..773388(+) (comFA) [Staphylococcus aureus strain C308]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENVIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=706136 PCM89_RS03600 WP_001670292.1 772306..773388(+) (comFA) [Staphylococcus aureus strain C308]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCCTATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATGTAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTCAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTTGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTGGTTGTTATCGATGCGCATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369