Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PCM89_RS03515 Genome accession   NZ_CP115887
Coordinates   755730..756701 (+) Length   323 a.a.
NCBI ID   WP_000876310.1    Uniprot ID   -
Organism   Staphylococcus aureus strain C308     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 750730..761701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCM89_RS03500 (PCM89_03500) nrdI 751803..752201 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  PCM89_RS03505 (PCM89_03505) nrdE 752164..754269 (+) 2106 WP_000855510.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  PCM89_RS03510 (PCM89_03510) nrdF 754389..755360 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  PCM89_RS14155 - 755563..755646 (+) 84 Protein_683 hypothetical protein -
  PCM89_RS03515 (PCM89_03515) ceuB 755730..756701 (+) 972 WP_000876310.1 ABC transporter permease Machinery gene
  PCM89_RS03520 (PCM89_03520) - 756688..757644 (+) 957 WP_001245584.1 iron chelate uptake ABC transporter family permease subunit -
  PCM89_RS03525 (PCM89_03525) - 757641..758402 (+) 762 WP_000616864.1 ABC transporter ATP-binding protein -
  PCM89_RS03530 (PCM89_03530) - 758521..759549 (+) 1029 WP_000754457.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  PCM89_RS03535 (PCM89_03535) - 759866..760180 (-) 315 WP_001123293.1 CHY zinc finger protein -
  PCM89_RS03540 (PCM89_03540) murB 760198..761121 (-) 924 WP_000608440.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35528.02 Da        Isoelectric Point: 10.1963

>NTDB_id=706135 PCM89_RS03515 WP_000876310.1 755730..756701(+) (ceuB) [Staphylococcus aureus strain C308]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSIGGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=706135 PCM89_RS03515 WP_000876310.1 755730..756701(+) (ceuB) [Staphylococcus aureus strain C308]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATCATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTATCAGACTCACAGCAAAATATATTGTTCTCAAGCCGAATACCGAGAACGA
TGAGTATTTTAATTGCTGGTAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGTATCTTAATTGCCTTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAATTAGTATTTGCTGTTATTTGCAGCATCGGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTTGCTAGTTTTACAACGTTTATCTCATTACGT
ACGAACGCAGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATCTTGTA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCGAATCATTTCACAATTGTAGGAATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCGATTTATAGAGGCGATCATTTAAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTGTTTTCTGATATAGTTGGCAGAATTGTAGTTTATCCTTATG
AAATTAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTACTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.812

99.071

0.474