Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NLL86_RS23380 Genome accession   NZ_CP100660
Coordinates   5082332..5083699 (-) Length   455 a.a.
NCBI ID   WP_254481439.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain ZL22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5077332..5088699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLL86_RS23360 (NLL86_23360) - 5077647..5077844 (-) 198 WP_254481435.1 YbdD/YjiX family protein -
  NLL86_RS23365 (NLL86_23365) - 5077858..5079924 (-) 2067 WP_254481436.1 carbon starvation CstA family protein -
  NLL86_RS23370 (NLL86_23370) - 5080090..5080473 (+) 384 WP_254481437.1 PilZ domain-containing protein -
  NLL86_RS23375 (NLL86_23375) - 5080716..5082233 (+) 1518 WP_254481438.1 nucleobase:cation symporter-2 family protein -
  NLL86_RS23380 (NLL86_23380) radA 5082332..5083699 (-) 1368 WP_254481439.1 DNA repair protein RadA Machinery gene
  NLL86_RS23385 (NLL86_23385) mscL 5083876..5084295 (+) 420 WP_254481440.1 large-conductance mechanosensitive channel protein MscL -
  NLL86_RS23390 (NLL86_23390) - 5084329..5085105 (-) 777 WP_176507689.1 ferredoxin--NADP reductase -
  NLL86_RS23395 (NLL86_23395) - 5085318..5086028 (+) 711 WP_254481441.1 autoinducer binding domain-containing protein -
  NLL86_RS23400 (NLL86_23400) - 5086122..5087246 (+) 1125 WP_254485625.1 methyltransferase -
  NLL86_RS23405 (NLL86_23405) - 5087277..5087432 (-) 156 WP_254481442.1 DUF2474 domain-containing protein -
  NLL86_RS23410 (NLL86_23410) cydB 5087442..5088449 (-) 1008 WP_186601184.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48696.12 Da        Isoelectric Point: 6.8984

>NTDB_id=706120 NLL86_RS23380 WP_254481439.1 5082332..5083699(-) (radA) [Pseudomonas fluorescens strain ZL22]
MAKAKRLYGCTECGATFPKWAGQCADCGAWNTLVETMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGLPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGFPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=706120 NLL86_RS23380 WP_254481439.1 5082332..5083699(-) (radA) [Pseudomonas fluorescens strain ZL22]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAATGGGCCGGCCAATGCGCCGACTG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAGAGCGGCGGCGCGGCGGCGCCCAGCGGCCGCGCGGGTTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAAGAGATCCCGCGTTTCACCACCAGCAGCACGGAACTC
GACCGCGTGCTCGGCGGTGGCCTGGTCGATGGCTCGGTAGTATTGATCGGCGGTGATCCGGGGATCGGCAAGTCGACCAT
TCTCCTGCAGACCTTGTGCAATATCGCCGTGGGCCTGCCTGCGTTGTACGTCACGGGTGAAGAGTCGCAGCAGCAGGTGG
CCATGCGCTCGCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTAATGACCGAGACCTGCATCGAAACCATCATCGCC
ACCGCCCGGGTGGAAAAACCCCGGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAGTCCGCCCC
GGGCGGCGTGGCCCAGGTGCGTGAGAGCACGGCGTTGCTGGTGCGTTATGCCAAGCAGAGCGGTACGGCGATCTTCCTGG
TGGGCCATGTCACCAAGGAAGGCTCGCTGGCCGGGCCCCGGGTGCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAG
GGTGAGTCCGACGGCCGCCTGCGCCTGTTGCGGGCCGTGAAGAACCGTTTCGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGACCGTGGCCTGAAAGAGGTGTCCAACCCGTCGGCAATTTTCCTCAACCGTACCCAGGAAGAAGTGCCCGGCA
GTGTGGTAATGGCGACCTGGGAAGGTACCCGGCCGATGCTGGTCGAGGTGCAGGCGCTGGTCGATGACAGCCACCTGGCC
AACCCACGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTTCTGCATCGGCACGGGGGTTT
TCCCACCCACGACCAGGACGTGTTCCTCAACGTGGTCGGTGGCGTGAAGGTGCTGGAAACGGCTTCGGACCTGGCGTTGC
TCGCAGCGGTGATGTCCAGCCTGCGCAACCGGCCGCTGGCCCATGGGTTGCTGGTGTTCGGTGAGATCGGCTTGTCGGGT
GAGGTGCGGCCGGTGCCCAGTGGCCAGGAACGCCTGAAAGAGGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGTAATGCGCCGAAGGAGCCGCCTGCGGGGTTGCAGGTGATTGCCGTGACCCGTCTGGAGCAGGCGCTGGATGCCTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(345-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.187

100

0.466
  radA Streptococcus pneumoniae R6

46.187

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.187

100

0.466
  radA Streptococcus pneumoniae D39

46.187

100

0.466
  radA Streptococcus mitis SK321

46.374

100

0.464
  radA Streptococcus mitis NCTC 12261

46.154

100

0.462